barSeed - Barley Seed Development Database

Probe CUST_19658_PI390587928

Source Contig U35_9725

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19658_PI390587928	Hv_44K_v2	AGAATTTGGACTGAAGTGCATGAACATTGAGACAACTCAAGGCCCGTCTATTCTTCTTGG	652	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.592	1.055	1.523	0.890	0.364	0.353
Raw	530.793	495.852	695.254	605.807	91.795	100.508

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54015.2	2673	2e-24	890 - 949	100	60 / 60	plus	ABC13506
MLOC	MLOC_54015.1	2659	2e-24	1780 - 1839	100	60 / 60	minus	ABC13506
JLOC1	JLOC1_34749.4	3171	8e-25	1289 - 1348	100	60 / 60	plus
JLOC1	JLOC1_34749.3	3200	8e-25	1289 - 1348	100	60 / 60	plus
JLOC1	JLOC1_34749.2	2826	8e-25	919 - 978	100	60 / 60	plus
JLOC1	JLOC1_34749.1	2776	8e-25	890 - 949	100	60 / 60	plus
Harvest21	ABC18756	854	3e-25	653 - 712	100	60 / 60	plus
Harvest35	U35_9725	854	3e-25	653 - 712	100	60 / 60	plus

Contig Sequence (854 bp)

>U35_9725 854 Hv_44K_v2
GCATCCTCGCCGCCGCCGCTCCATCCCTAGGAGCAGCCGCCATGGCGCCGACGGCCGACT
CCGTCGACCTCAAGGGTCGAAAGAAGGTCAAGAAATCCAACTCCAAAGACGAGAGAAAGC
ACCGGACCGACCCGAGGTTCAGGCCGATGCGGCGGAGGGAGGCGAAGGTCGCCCTGGACT
CGAGGTTCAACGGCATGCTGACCAACCCGATGTTCGCTTCGTCGGAGGCGCCCGTGGACA
AGCGCGGCAGGCGCCGCAAGAAGGGCGCCAAGGAGAACCCCATGCTGCATTACTATCTCA
AACAAGAGGAGGGGGATGAGAAGGAAAAAGAGAAGGAGAAAGTGAAGCTGGTCCAAGAAG
ATGAGGACGATGAGGTGGAAGAAGAGGATGAGCAAGTTGAACAAGAGAGTTCTAGCAGCG
ATGATGATGAGGAGGAGGAGGAAGATGACGATGACGAGTGCTCTGTCGGCAGTGACATTG
CTCATTACTTGATGGCGAGGCATGATGATACACCTATTATTGATAAGGAAACTCATAGGC
TTGCTGTTGTTAACATGGACTGGGATCACATTAAGGCGGTGGACTTGTATATGGTGATGA
CATCTTGCATCCCAAAAGGTGGACGAGTTCTATCAGTCTCTATATATCCGTCAGAATTTG
GACTGAAGTGCATGAACATTGAGACAACTCAAGGCCCGTCTATTCTTCTTGGTATTGATG
GTGATAGTGAAGGTGATGGTGGGGAAGATGGCAATGACAGTGACAGTGATGAAGAGGATG
ACAAAGAAGATCGTGAGCAGGACTCTGANAGATGACATGAAAATGACAATGACAGTGACG
AAGACGATGACAAT

Homology of Contig U35_9725 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None