barSeed - Barley Seed Development Database

Probe CUST_19657_PI390587928

Source Contig U35_9726

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19657_PI390587928	Hv_44K_v2	TCAACTACACATGCAACGACATCCCAAATAAGTCGGACAAGATGGTGATCGTCACCAAGT	374	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33876.3	2423	2e-24	1862 - 1921	100	60 / 60	minus	ABC10202 ABC39374
MLOC	MLOC_33876.4	2458	2e-24	1661 - 1720	100	60 / 60	minus	ABC10202 ABC39374
JLOC1	JLOC1_21888.1	2779	8e-25	620 - 679	100	60 / 60	plus
Harvest21	ABC21276	862	3e-25	375 - 434	100	60 / 60	plus
Harvest35	U35_9726	862	3e-25	375 - 434	100	60 / 60	plus

Contig Sequence (862 bp)

>U35_9726 862 Hv_44K_v2
CCCTCTCCCAACTCCAAATCCAAACCCCATCCCCTCTCCCAACTCCAAACCATTTCCGCC
GCCGCTGCCCACCTTCACCACCGCCCACGAAATCTTCCTCCGGAAGGCGCGCGAAACCCC
GCCGGAGACGAGAGGCATGGACGCCAAGTCGGTGACGCCGGGCGCCGTGGCCCTCATCCT
CGCCAACCCCACGCCGGAGTCCGCCGCCGACGTGCCGGAGATCGTCGTGCAGGTCGTCGA
CCTCAAGCCCATCGGCTCCCGCTTCGCTTTCATGGCTAGCGACGGGGAGGCGAAGGTCAA
GGCGATCCTCTCCTCCCACTTCGCGTCGGAGGTCCAGTCCGGCAGACTCCAGAACCTCGG
CCTCGTCCGCATCCTCAACTACACATGCAACGACATCCCAAATAAGTCGGACAAGATGGT
GATCGTCACCAAGTGCGAGGTCGTGTCCCAGGCGCTTGACGCCGAGATCAAGAGCGAGGT
CAAGATGGAAGAGCCATCCGTTCTCATGAAGCCCAAGGAGGAGGATGCGGTTATCTCCAA
GCCCAATGGTGCGTCCCCGGATTCGATTATGCTGAAGCCCAGGCACGACGTGAAGTCCGC
GTCCCAGATTGTTAGCGAGCAGCGTGGAAATGCTGCTCCCGCTGCTCGCTTGGCCATGAC
CAGGCGGGTCCATCCTCTGATCTCCCTGAACCCCTACCAGGGGAATTGGGTCATCAAGGT
GCGGGTCACAAGCAAGGGCAACCTCAGGTCATACAGGAATGCCCGTGGAGAAGGCCATGT
CTTCAACGTAGAGCTCACTGACGAGGATGGCACCCAAATCCAGGCCACCATGTTCAACGA
GCCTGCAAAGAAGTTCTATCCC

Homology of Contig U35_9726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11540.1	631	1e-108	protein\|RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed
Brachypodium v1_2	Bradi1g69980.2	532	7e-119
Arabidopsis v10	AT5G61000.1	629	1e-89	\| Symbols: RPA70D, ATRPA70D \| Replication factor-A protein 1-related \| chr5:24549682-24552641 REVERSE LENGTH=629