- Probe CUST_19652_PI390587928
- Source Contig U35_9731
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19652_PI390587928 | Hv_44K_v2 | ACTTTGAATAATATCCTGCTCGAGTCTGACTTTGAGCCACGGTTGTGTGATTTTGGCACC | 424 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.150 | 1.472 | 1.684 | 1.572 | 0.357 | 0.442 |
| Raw | 22.882 | 46.123 | 44.639 | 71.517 | 3.328 | 6.075 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69628.2 | 4202 | 2e-24 | 2945 - 3004 | 100 | 60 / 60 | plus | ABC16556 |
| MLOC | MLOC_69628.1 | 4855 | 2e-24 | 3384 - 3443 | 100 | 60 / 60 | plus | ABC16556 |
| JLOC1 | JLOC1_46154.4 | 4685 | 8e-25 | 1174 - 1233 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_46154.3 | 4668 | 8e-25 | 1157 - 1216 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_46153.1 | 4900 | 8e-25 | 3453 - 3512 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46154.2 | 5170 | 8e-25 | 1659 - 1718 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_46154.1 | 4291 | 8e-25 | 780 - 839 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC21384 | 514 | 3e-25 | 392 - 451 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9731 | 547 | 3e-25 | 425 - 484 | 100 | 60 / 60 | plus |
Contig Sequence (547 bp)
>U35_9731 547 Hv_44K_v2 CACGCGTCCGGTGAATGCCACAGACAACTTCAACGAAACCTTCTGCATTGGTAAAGGAGG GTTCGGGACCGTGTACAGGGCCGAGCTTGCAAGTGGGCAGGTTGTGGCTGTGAAGCGGTT CCATGTCGCTGAGACAGGCGACATATCGGATGTTAGCAAAAAGAGCTTTGAGAATGAGAT CAAAGCACTTACAGAGATCCGCCACCGGAATATCGTCAAGCTCCATGGCTTCTGCACTAG CGGTGACTACATGTACCTGGTGTACGAGTACCTGGAAAGGGGCAGTTTGGCGAAGACATT GTATGGGGAGGAAGGGAAGAGGAAGCTGGACTGGGACGTGAGGATGAAGGTGATACAGGG GGTCGCTCATGCCCTGGCCTACTTGCATCATGACTGCGGGGGCGGCATCGTTCATCGTGA CATCACTTTGAATAATATCCTGCTCGAGTCTGACTTTGAGCCACGGTTGTGTGATTTTGG CACCGCAAAGTTGCTTGGGTCTGCTTCGACAAACTGGACTTCAGTGGCAGGATCGTATGG CTACATG
Homology of Contig U35_9731 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g33040.1 | 1214 | 8e-109 | protein|receptor-like protein kinase precursor, putative, expressed |
| Brachypodium v1_2 | Bradi3g28380.1 | 1213 | 2e-113 | |
| Arabidopsis v10 | AT4G08850.1 | 1045 | 7e-56 | Leucine-rich repeat receptor-like protein kinase family protein | chr4:5636693-5640496 REVERSE LENGTH=1045 |