barSeed - Barley Seed Development Database

Probe CUST_19651_PI390587928

Source Contig U35_9732

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19651_PI390587928	Hv_44K_v2	CCTGCGTCTGCAACTCTGCATGCATTGTTCATCTCCATAGAGCGAGTGAATAAAATAAAA	917	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22579.1	1547	2e-24	1419 - 1478	100	60 / 60	plus	None
JLOC1	JLOC1_15654.1	1481	1e-23	1424 - 1481	100	58 / 58	plus
Harvest21	ABC20900	977	3e-25	918 - 977	100	60 / 60	plus
Harvest35	U35_9732	977	3e-25	918 - 977	100	60 / 60	plus

Contig Sequence (977 bp)

>U35_9732 977 Hv_44K_v2
GGCAAGGAGCTCCAGGAGGCGCCACAGGGTGGGCCACGCGACTGGAGAAAGAGCACCTGC
GTCAGCGTCGGTGCCGGCCCAGGGAAAAGAGCCCGTGGTCGATGCAGCCGGCCGGTCTTG
TCGCCGTCGTGACCTGTGCATCAAGAGTGACGGCGGGGAGCCCCGGAGGCCAAGGGCGAC
AGGCCCGCCGGACGACGGCCTCAACGTCAAGGTGATCGCGTCGCATAACGAAATCATAAT
CGACCTGCAGGAAAAGGACACACCCGAGAGAAGACTCCGGCCAATCGTGACCAGGCCGGC
GAGGAGACAACCTAAGCCAAACGAGCAGGATGGCAACAACGTCGACCTCGCCGACGTGAC
CGCAAGAGCAAGTTGTGCCTCCGAGGAGAGCAGCATCAGCAAGCCGAGACTGTCTTCGGC
ATCGTTGTCGGGGCGCCGCCGCCTCAAGACGCTCGCCAAGAGCCCGCGTCTGACCGCCAC
CGGCAAGAAAGTGAAGCCGCCGGCGCGAAATTGGACGGCATCACCGCCACTGCTGCCGGC
GCCGGTGATTGTGAGCAGCTACCCGGTGGTGAAGATGTCGGAGGACCCAGGGCAGGACTT
CCGCGAGTCCATGGAGGACATGATCAGCGCGAAGGGCATCCACGAGGCCGAGGACCTGGA
GGACCTCCTCGCCTGCTACCTGTCCCTCAACGACGCCGAGCACCATGACCTCATAATCGA
AGTCTTCGAGCAGATTTGGGTGAGCCTCGCCAGCGCCAAGCCGTGAAAGCCGCCGGCCAT
GGCAGCTCCGTGGTGCAGCAATGGTGGATCCTATCCTTACTATTGCTGCCACATTAATTA
ACTAGATTAATTGCGTCTATATCTCGTTAATGACAGCGATTAATAGGAGATCTCCATAGA
AGGAAATTTGCAACCCTCCTGCGTCTGCAACTCTGCATGCATTGTTCATCTCCATAGAGC
GAGTGAATAAAATAAAA

Homology of Contig U35_9732 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g39950.1	473	4e-53	protein\|DUF623 domain containing protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None