barSeed - Barley Seed Development Database

Probe CUST_19646_PI390587928

Source Contig U35_9739

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19646_PI390587928	Hv_44K_v2	GATGGCTAATTATATGTTTTAATAATTTGTTCCCGTTCGTTCTAAACCATGTCCCTGGTT	828	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.091	1.576	1.285	0.946	0.439	0.408
Raw	123.724	281.291	197.794	231.060	37.263	37.937

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365066	1886	2e-24	1794 - 1853	100	60 / 60	plus	ABC18665
MLOC	MLOC_58489.1	5289	2e-24	4121 - 4180	100	60 / 60	plus	ABC18665
MLOC	MLOC_58489.2	5322	2e-24	4084 - 4143	100	60 / 60	plus	ABC18665
MLOC	MLOC_58489.3	1529	2e-24	1061 - 1120	100	60 / 60	plus	ABC18665
JLOC1	JLOC1_38007.1	2288	8e-25	1103 - 1162	100	60 / 60	minus
JLOC1	JLOC1_38006.1	1887	8e-25	1100 - 1159	100	60 / 60	plus
Harvest21	ABC18665	908	3e-25	829 - 888	100	60 / 60	plus	ABC18665
Harvest35	U35_9739	908	3e-25	829 - 888	100	60 / 60	plus

Contig Sequence (908 bp)

>U35_9739 908 Hv_44K_v2
GAATGACTTGCAGGACCCAAACAATAAGAGAAAGATCATATGCAATGACGAGCTACGATT
GGTTTTTGAGACTGATTGCACTGATATGTTCAAGATGAACAAGCTTTTATCGAAGCATAT
AAGACCACTCGAGCCAACAAAAGATTCAAATCGAGATATGAAAAAGCTGAAGCCTGTGGA
AGATGAACACGTTCCTCCCGCCGAAGATGTTGCTACAAACCAACCTCCAGTTAATGTGTC
TGATGCTCTTGCTAGCTTTTTTGGAACTGAAGAAAGAGAGATGACCCAATCCGAGGTTGT
CAAGCGTGTTTGGGACCACATCAAAAGCAACAATCTAGAGGATCCATCAAATCCCACGAT
GATATTATGCGACTCTAAGCTTAAAGATCTCTTTGGATGTGAAAGTGTAACTGCTCCGGG
GGTTTCAGAGTTGCTGTCAGCCCACCTTTTCAAGCAACCTAACAAGATCTAACTGATGAA
ACGTGGTTGGTCTAACATCCTGGTAGTAGGAACTGATGAAATGGCAGAAACTCGCTGAAG
TTATTAACTGCATCTTTGGTACCCAACAGACTCATTTACTTCTGAGAAAGGGCTGTAGGC
TAATCTCATCACAGTAGCAATGAAAAGGAATGGTAGTTCTGCATATTGTCTAGTTTGGTC
TCCCCGGAAGGGTCACATCTGGTAGGCTGTCCGAATTTGTAGCACTGAAGCAACAGTAAG
AGAAAGCGAAAGCTGATTAACTTTGATGTAAATTCAGCAACCATAGACGCGTCTTATGGT
AAGAGGCAGCTTTCTCCCTTTTTACCAGAACATTGTGATGTTGTAGGTGATGGCTAATTA
TATGTTTTAATAATTTGTTCCCGTTCGTTCTAAACCATGTCCCTGGTTAATCTTATTCAT
TAAGTTCT

Homology of Contig U35_9739 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39310.1	407	6e-80	protein\|SWIB/MDM2 domain containing protein, expressed
Brachypodium v1_2	Bradi3g39760.1	417	2e-84
Arabidopsis v10	AT4G22360.1	385	2e-53	SWIB complex BAF60b domain-containing protein \| chr4:11807811-11809660 FORWARD LENGTH=385