barSeed - Barley Seed Development Database

Probe CUST_19641_PI390587928

Source Contig U35_9745

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19641_PI390587928	Hv_44K_v2	TGGTTTTCATGGTGTTCCAGATATACTGCCTCATCTCGACGGTTGGCCTGCCGCTGGAGC	104	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16499.1	2125	2e-24	1798 - 1857	100	60 / 60	minus	ABC39614
MLOC	AK370106	1969	7e-23	115 - 174	98	59 / 60	plus	ABC39614
JLOC1	JLOC1_11361.1	2857	8e-25	826 - 885	100	60 / 60	plus
Harvest21	ABC19051	539	3e-25	105 - 164	100	60 / 60	plus
Harvest35	U35_9745	532	3e-25	105 - 164	100	60 / 60	plus

Contig Sequence (532 bp)

>U35_9745 532 Hv_44K_v2
TCTCTCTCTCTCTCTCCTTCCTTCTTCCTCCCGCCTCCCCTCCATCCTCCGCTAGCTAGA
GACAGAGGATACATACAAAGTGTGGCTGGCAATGGCGCGGTGCTTGGTTTTCATGGTGTT
CCAGATATACTGCCTCATCTCGACGGTTGGCCTGCCGCTGGAGCCGGCGGAGCTGCTGCA
GCTCGGCGGCGACGTGGGCAGCGGCCGCCTCAGCACCGACCCGGCCGACGTCCTGGAGGC
GTCCCGCGACTTCGGCGGGTTCACCCGGGGCGAGCCCTTGGCGGTGTACCACCCGAGCGG
GGCCGGCGACGTCGCGGCGCTGGTCCGGGCGGCGTACGGGTCGGCCCGCGACATCCGCGT
GTCGGCGCGCGGCCACGGGCATTCCATCAGCGGGCAGGCGCAGGTGCCCGGCGGCGTGGT
CGTGGCCATGAGCCGCGGGGGCAAGTCGCAACCGCAGGCGCGCGCATTGCCGGTGTACTC
GCCGGAGCTGGGCGGGCACTACGTGGACGTGTGGGGCGGCGAGCTGTGGATC

Homology of Contig U35_9745 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g56810.2	505	1e-59	protein\|cytokinin dehydrogenase precursor, putative, expressed
Brachypodium v1_2	Bradi2g51530.1	550	2e-65
Arabidopsis v10	None