- Probe CUST_19639_PI390587928
- Source Contig U35_9747
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19639_PI390587928 | Hv_44K_v2 | GAGTACTACAACATGACGAATGGACCAGTTCAGACACATTTTGAGTTTGCTGTCACAGCC | 493 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.446 | 0.372 | 0.655 | 2.810 | 1.731 | 2.332 |
| Raw | 2.892 | 3.013 | 10.085 | 68.804 | 15.325 | 22.631 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_2619.1 | 1310 | 2e-24 | 560 - 619 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_1559.1 | 1305 | 8e-25 | 555 - 614 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC21317 | 552 | 1e-24 | 494 - 552 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_9747 | 553 | 3e-25 | 494 - 553 | 100 | 60 / 60 | plus |
Contig Sequence (553 bp)
>U35_9747 553 Hv_44K_v2 GGAACACCTTGCCTCTTCCCTGCGTTCCCATCCTGCTCAACGTCTCTTCTCACCCAAATT CTCCAGTTCCCGATCGAAATCAACGTGGATTCGATCGATCTCATCGTACACCATACACTA CAAGTGCCCAAACTTGCTCTTCTAGAAACCTTCGCCACACCAGCCGGCCTCACGTTTTGA TTGCGGCTAGCTGCAAAGGTGAGCGAGGGGCAGGAGGCCGGCTTAGATGAATCGGTTAGT CGGCAGTGGCATTGGCAGCGCAGACGTGCCACCGCCGCAGCATCAGCAGATGGAGGATGT GATGGGCCTCAGCGATCCCATGCTACTGGAGCTGCGCAACAATTACCGCCAGAGGATAAT TGAGTATGCAAGAAAGGCGGTAATTGCCAGATTAGATGCACGATCGAGGACACCAGCTGA CTGGCAGCGGCGGCTGCCTGAACTTGCTTGGCGGGTCGAGAAAGTCTTGTTTGAGAAACA CCCCAATAAGAGGGAGTACTACAACATGACGAATGGACCAGTTCAGACACATTTTGAGTT TGCTGTCACAGCC
Homology of Contig U35_9747 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |