- Probe CUST_19636_PI390587928
- Source Contig U35_9750
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19636_PI390587928 | Hv_44K_v2 | GAAGTACGTCAGCTTTATTCTAATATAATGCTTATGGTTGCTGCAAGGGCGAAAAGCCGT | 813 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.001 | 2.225 | 1.255 | 0.860 | 0.375 | 0.435 |
| Raw | 37.711 | 69.197 | 31.399 | 34.693 | 3.790 | 5.821 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_37960.9 | 1344 | 3e-24 | 1286 - 1344 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_37960.8 | 1335 | 3e-24 | 1277 - 1335 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_37960.7 | 1339 | 3e-24 | 1281 - 1339 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_37960.6 | 1250 | 3e-24 | 1192 - 1250 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_37960.5 | 1236 | 3e-24 | 1178 - 1236 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_37960.4 | 1164 | 3e-24 | 1106 - 1164 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_37960.3 | 1136 | 3e-24 | 1078 - 1136 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_37960.2 | 1127 | 3e-24 | 1069 - 1127 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_37960.1 | 3442 | 3e-24 | 3384 - 3442 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_9750 | 873 | 3e-25 | 814 - 873 | 100 | 60 / 60 | plus |
Contig Sequence (873 bp)
>U35_9750 873 Hv_44K_v2 TGGGCAATTTCGGGATTCGTCATACCAAAAAATAAGATACCAGGCTCAATGATTATCCGC AAGGTTGAAGCACCAACTGTCCCCAAGGAAGAGAACCCTAAACCTCTCAAAAGAAACACA AAGTGGGGGCCTGATCTTACCTCCGATCCTGCCGTCAGGAAAGCCAAAGCTCTTGCTTAC CAGACAACTGGAACACTTCTTTACTGTTAAGCATGCAAGAGTTTGTGCAACTATGTTTCT GTGTATCTTTAGCAAACTCAGGCAGGTGTCATACTCATAGTTGCATTTCTACATCCAATC ATTAACAGTAGAACCCAGCGTTGTGCATTCTTCTTCTTGGGTATGCTAAGACGTGTTGTA AATAGTTCCAGATCGCATTCAGTTATAAGGATCTACGCCTTGCAATCATGTATTCTTAGC GGCCGCTGCCGGGTGTGATGCAGGCTCGCCATGGTTGTTCCGCACCGGTTGGAAGTCTCG GCGCCATTGCTCGTGTTTTCTAGAGCACCTGCTGACCGACAATGCAAAGGTTCCTGACCC AAACAGGGTCGTTTAACAGCATAGGGATTGATGGGCTTGCGCATGTGGCCTTGGGACGCC GCCAAGCGTTAACTGGAATGGAGTATTTGTTATTTATGACATCATGTTAAGTTGATGCTT GCCGTCATATGTGCTGATGCTACAACAAATAGTTGTCGCTTCTTTTTAACGAAAGGGAGG GGGTCATTGTGAGTTGGATATCTGTGAGAAGTACGTTAATATATCCGTGAGATGAGAAAT GGTGCTTGCTTGCTTGCTTAGACTTTACTGAAAGAAGTACGTCAGCTTTATTCTAATATA ATGCTTATGGTTGCTGCAAGGGCGAAAAGCCGT
Homology of Contig U35_9750 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |