barSeed - Barley Seed Development Database

Probe CUST_19632_PI390587928

Source Contig U35_9754

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19632_PI390587928	Hv_44K_v2	AATCCTTACCTCTGTGACTAACGTCTCTGAGAAGACTCAAAACGCCTCAGCTCTTTAGCT	913	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.764	2.044	1.035	0.866	0.490	0.719
Raw	285.299	524.036	230.014	315.411	58.124	95.874

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53965.4	668	2e-24	352 - 411	100	60 / 60	plus	ABC39081
MLOC	MLOC_53965.3	1991	2e-24	1601 - 1660	100	60 / 60	plus	ABC39081
MLOC	MLOC_53965.1	2243	2e-24	1816 - 1875	100	60 / 60	plus	ABC39081
JLOC1	JLOC1_34709.1	2254	8e-25	1840 - 1899	100	60 / 60	plus
Harvest21	ABC39081	434	3e-25	45 - 104	100	60 / 60	minus	ABC39081
Harvest35	U35_9754	1017	3e-25	914 - 973	100	60 / 60	plus

Contig Sequence (1017 bp)

>U35_9754 1017 Hv_44K_v2
AAAAATGCGTGAACTACGCGTTAATTCAGTGGTTATAACTACCGGAAATTTGCTGCAAGG
GATCTTTACCTCAAAGGATGTGCTTATGCGTGTTGTGGCACAAAATCTTTCTCCCGAATT
AACTCTAGTAGAAAAGGTAATGACTGCACACCCTGACTGTGCCACATTGGACACGTCAAT
TCTGGACGCATTACATATAATGCATGATGGCAAATTCTTGCATATTCCTGTTGTTGATGG
AGATGGTAGAGTTGTTGCTTGTTTGGATGTTCTGCAACTTACCCAGGCAGCTATTTCTAT
GGCTGAAGGAGGTTCTGGAGCTGCAAATGATGTGGCAAACACAATGATGCAGAAGTTCTG
GGACTCTGCTCTTGCTTTGGAGCCTTCAGATGAGGAATTTGATAGCCACAGCGAAATGTC
CTTAGTGATGCCGTCAGAGGTCGGAGATGGCAGGAGTAGCATTTATCCTGCTGTTGTTGG
CAATTCTTTTGCCTTTAAGCTTCAAGACAAGAAGGGACGTATGCATAGGTTTACATGCGG
TTCTGAGAGTTTAGATGAGCTTGTGTCTTCTATAACACAAAGATTAGGCACTGTTGTTGA
AAAGGGCCTAATTCAACTTTTGTATGACGATGATGAAGGCGATAGGGTGCTGCTTACTAC
AGATTCTGATCTTGCCGGTGCTGTTCTCAATGCCAAATCATCCGGATTGAAGGTCCTGAG
GTTGCACATTGACGACTCGGAATCCAGTCCTGAAGTTACAAAGCAATCGCCGGAGCTGGT
GCCTCCCCAGGAAAGTCAGCTGACACCTGTTCATTACGGACTAATGGCTGGTGCTATTGC
CCTGACTGGTGTCGCGGTGGTGGTTTACTTGAGGCGCTCGAAAGTGTGAATTCTGGGAGG
AACACTTAACTCCAATCCTTACCTCTGTGACTAACGTCTCTGAGAAGACTCAAAACGCCT
CAGCTCTTTAGCTGGCCAAGGATGAGGAACTGAACACCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_9754 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g06930.1	561	1e-155	protein\|CBS domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g24320.1	557	2e-174
Arabidopsis v10	AT3G52950.1	556	4e-108	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein \| chr3:19634866-19636536 FORWARD LENGTH=556