- Probe CUST_19630_PI390587928
- Source Contig U35_9756
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_19630_PI390587928 | Hv_44K_v2 | GCATGACGGCGTCAATGTTCTCTTCATGCTGCAAGTTGATGGGGACTATACTTACACTAA | 434 | GeneList: purple MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.401 | 0.483 | 0.979 | 1.626 | 0.985 | 1.433 |
Raw | 38.140 | 64.735 | 128.159 | 328.773 | 72.503 | 114.137 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK364329 | 1547 | 7e-23 | 397 - 456 | 98 | 59 / 60 | plus | ABC17718 |
MLOC | MLOC_3918.1 | 649 | 7e-23 | 532 - 591 | 98 | 59 / 60 | plus | None |
JLOC1 | JLOC1_2363.1 | 860 | 4e-23 | 554 - 613 | 98 | 59 / 60 | plus | |
Harvest21 | ABC18903 | 492 | 4e-24 | 435 - 492 | 100 | 58 / 58 | plus | |
Harvest35 | U35_9756 | 494 | 3e-25 | 435 - 494 | 100 | 60 / 60 | plus |
Contig Sequence (494 bp)
>U35_9756 494 Hv_44K_v2 GCGGACGCAAAATTCCACGCTCCCGAACCAATCCGGCGAGACGGGGGCGCCTTCTCCACG CCGCCGCCGCCGCGGCGTGGACCAGCCCGAACAGACCAACCCCGAGCTTCTCGCCGTCCC GGCAACGCACGTGTCCCGGGCGTCCACCGCGACGCCTCGATCCGCGCTCGTGCCTTCATG AGACTCCTCGCGCTCCTCGTGGTCGCGGCGGCCCTCGTGGCCTTCGCCGCCGCGCACGAG CACCACGGCGAGGCTCCCACCTGCGCCGGCGGCGGTGGTCGCGTGGTCGCGGAGTTCCGC CCTGGGGAGGTGACCCTGGACGGGCACCCCGCCGACTGGGAGGCCGTTGAGGCCTCGGAG TTCGCGTTGCTCCCGGCGCTGGACCCTGACGATGACAAGGCCTACACCGGCGGCAAGGTC GCCGTCAAGGCTGTGCATGACGGCGTCAATGTTCTCTTCATGCTGCAAGTTGATGGGGAC TATACTTACACTAA
Homology of Contig U35_9756 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |