barSeed - Barley Seed Development Database

Probe CUST_19629_PI390587928

Source Contig U35_9757

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19629_PI390587928	Hv_44K_v2	TTATTGGCAATCTCGATCCGGAAGTTGATGAGAAGCTTCTCTACGATACCTTCAGTGCAT	645	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.992	0.908	2.035	1.897	0.793	0.438
Raw	51.567	71.178	144.473	208.370	31.528	19.042

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369044	2002	2e-24	653 - 712	100	60 / 60	plus	ABC20761
MLOC	MLOC_61273.1	1429	2e-24	483 - 542	100	60 / 60	plus	ABC20761
JLOC1	JLOC1_40039.2	856	8e-25	48 - 107	100	60 / 60	plus
JLOC1	JLOC1_40039.1	1331	8e-25	162 - 221	100	60 / 60	plus
Harvest21	ABC19143	716	3e-25	646 - 705	100	60 / 60	plus
Harvest35	U35_9757	716	3e-25	646 - 705	100	60 / 60	plus

Contig Sequence (716 bp)

>U35_9757 716 Hv_44K_v2
ACCCTCTATCTCTCGCCACACATGGCGAACAGCTAACCCTAGCCGCCGCCACTGCACCGG
CGCCTCCCCCGCCCCACTGACTGGCTTCCTAGGGCTTCCCTCCGTCCGTTTCTTCACCGG
TCGCGACGCCGCCACCCTCGCCAGCGCTGCTCCCTGCACGGACGGCACGAACGCCGCCGC
CCCGTACAAGATACTGCATCGACTCCCCAGCCCGTCCTCGCCCTAGTGGAGACTCCATCC
CCGCGGCCCCGCTTTCTTAGCACTCTCGCCGTCGCAGCCCCTCGCGCCGCCGGGAGCCAG
GCATGACGACGCGTATCGCGCCCGGCGTGGGCGCGAACCTCCTCGGGCAGCACTCGGCGG
AGCGCAACCAGGACGCCACCACCTACGTCGGCAACCTCGACCCGCAGGTTTCGGAGGAAT
TACTGTGGGAGTTGTTTGTCCAAGCAGGCCCTGTTGTTAATGTCTATGTCCCGAAAGACA
GAGTTACAAATCTACACCAGGGCTATGGGTTTGTAGAATTCAGGAGTGAGGAAGATGCAG
ATTATGCTATTAAGATTTTGAACATGCTCAAATTGTACGGAAAGCCAATAAGAGTAAACA
AGGCTTCCCAAGACAAGAAGAGCTTGGATGTTGGTGCGAATCTTTTTATTGGCAATCTCG
ATCCGGAAGTTGATGAGAAGCTTCTCTACGATACCTTCAGTGCATTTGGGGTGATT

Homology of Contig U35_9757 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g31900.1	356	8e-91	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi3g27920.2	360	7e-92
Arabidopsis v10	AT2G18510.1	363	2e-85	\| Symbols: emb2444 \| RNA-binding (RRM/RBD/RNP motifs) family protein \| chr2:8031554-8033517 REVERSE LENGTH=363