barSeed - Barley Seed Development Database

Probe CUST_19601_PI390587928

Source Contig U35_30801

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19601_PI390587928	Hv_44K_v2	TCCATGCATGGCCTTAGCCGCCATTTTTACTCGCTCTGTTCATAGAAGAAGAGATGGCGT	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53764.1	836	2e-24	472 - 531	100	60 / 60	plus	None
MLOC	AK362864	2509	7e-23	2290 - 2350	98	60 / 61	plus	ABC01962 ABC01972 ABC44247
JLOC1	JLOC1_34558.1	922	8e-25	463 - 522	100	60 / 60	plus
Harvest21	ABC30862	422	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_48858	489	3e-25	177 - 236	100	60 / 60	minus
Harvest35	U35_30801	422	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (422 bp)

>U35_30801 422 Hv_44K_v2
ACGCCATCTCTTCTTCTATGAACAGAGCGAGTAAAAATGGCGGCTAAGGCCATGCATGGA
TCCCTCATCCCTCCCTACCCTTTGGTCCCCTGCGCCGCCATGCCGCGGCCGTAGTGCCAC
GAGTGGCCGCCGAGCCCTCTGGCGAACCGCTGCAGCGGGCTCAGCCGCGCGCACCCGACG
ATGCCCTCTGCCGCCGCCGCCGCGCTCTTGTCGCCGCTCTGCTTCTTGAGCTTGTCCATG
CTGACGGCTCTGGCGTTGAACTTGGCCGCCGCCGCCGTTGGTGGTGGCGCGCTCGCCTTC
TTGAGGGGCGCGTCGGGCTGCTGAGCCGGCGGGCACTTGGGGAGAGGGTCTTTGCTGATC
CGGCCGCCTTCCGACGAGCTCCGGAACAGGAGGAGGTCGCTGAGCCGCCACCTCCTCCAC
CC

Homology of Contig U35_30801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None