- Probe CUST_1959_PI390587928
- Source Contig U35_46781
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1959_PI390587928 | Hv_44K_v2 | ATCTTTGCGACCAACGAGGTTGTCGCCAAGTCGCGGTTCTGGTACTTCCTTGGCAAGCTC | 83 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.022 | 0.945 | 1.663 | 0.952 | 0.862 | 0.772 |
| Raw | 174.456 | 238.808 | 383.351 | 306.981 | 109.923 | 109.603 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC47322 | 150 | 3e-25 | 84 - 143 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_46781 | 150 | 3e-25 | 84 - 143 | 100 | 60 / 60 | plus |
Contig Sequence (150 bp)
>U35_46781 150 Hv_44K_v2 TGGCACGCTTCCAGGAGTACCAGATCATCGGGCGCCATCTGCCCTCAGAGACCAACCCCT CGCCCAAGATCTACCGCATGCGCATCTTTGCGACCAACGAGGTTGTCGCCAAGTCGCGGT TCTGGTACTTCCTTGGCAAGCTCCGCAAGA
Homology of Contig U35_46781 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |