barSeed - Barley Seed Development Database

Probe CUST_19590_PI390587928

Source Contig U35_16514

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19590_PI390587928	Hv_44K_v2	GCTGAACCCCGTTATAGACCATGATATGTCTTCAGTTATACGGGCCAGCCCATCAAAAAA	1775	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.227	1.214	1.218	0.841	0.280	0.205
Raw	125.013	188.282	169.647	183.151	21.248	17.638

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355681	2181	3e-21	2128 - 2181	100	54 / 54	plus	ABC05809 ABC49877
JLOC1	JLOC1_6394.2	2496	4e-23	2164 - 2220	100	57 / 57	plus
JLOC1	JLOC1_6394.1	2017	4e-23	1685 - 1741	100	57 / 57	plus
Harvest21	ABC05809	1844	3e-25	1776 - 1835	100	60 / 60	plus	ABC05809
Harvest35	U35_16514	1844	3e-25	1776 - 1835	100	60 / 60	plus

Contig Sequence (1844 bp)

>U35_16514 1844 Hv_44K_v2
GGGAGGACGGCTGCGCGGTCGCCGACGGCCAAGGGAGCGCGGCCGTGGACGGCCCGACGG
ACGTCATCATCGTTGGTGCCGGGGTGGCCGGATCTGCCCTCGCCTACACGCTCGGAAAGG
ATGGTCGACGGGTGCATGTTATAGAGAGAGACCTGACAGAGCCCGATAGAATTGTGGGTG
AATTGTTACAGCCTGGAGGCTACCTGAAATTGATGGAATTGGGTCTGCAGGACTGTGTTG
ATGAAATTGATGCACAGCGTGTCCTTGGTTATGCATTATTCAAAGATGGGAAGAACACAA
AACTTTCTTACCCCTTGGAGAAGTTCCATTCAGATGTGGCTGGCAGGAGCTTTCACAATG
GACGATTTATACAGAGGATGCGTGAAAAAGCTGCATCATTGCCCAATGTCCAACTGGAGC
AAGGAACAGTTACATCTTTGCTTGAAGAAAATGGTACAGTTAAGGGTGTGCAATACAAGA
TCAAGTCAGGTGAAGAACTAAAAGCTTATGCACCATTGACAATTGTGTGCGATGGCTGCT
TTTCGAACTTAAGGCGTGCCCTTTGCTCTCCAAAGGTTGAAGTACCGTCTTGCTTTGTAG
GGCTTGTCTTGGAGAATTGTCAACTTCCTCATGCGAACCATGGCCATGTTATCTTGGCCA
ATCCTTCTCCCATCCTATTTTACCCGATAAGCAGCACCGAGGTTCGCTGTTTGGTAGATG
TCCCTGGCCAGAAGGTGCCCTCCATAGCAAGTGGTGAAATGGCAAATTATCTCAAGACCG
TGGTTGCACCTCAGATTCCTCCAGAAATCTACGATTCTTTTATAGCAGCCATTGATAAGG
GAAGCATAAGGACAATGCCAAATAGGAGCATGCCAGCTGCACCACATCCAACACCTGGTG
CACTTTTGATGGGAGATGCTTTCAATATGCGACACCCTTTAACAGGTGGAGGAATGACTG
TTGCATTATCAGATATAGTCGTCTTGCGTAATCTTCTCAAGCCTCTTCGCAATCTGCATG
ATGCCTCTGCCCTCTGCAAATACCTAGAGTCATTCTACACTCTACGGAAGCCGGTTGCTT
CTACAATAAACACCTTGGCTGGTGCTCTATACAAAGTCTTCAGTGCCTCGCCTGACAAGG
CTAGGGACGAGATGCGCCAAGCATGCTTTGATTACTTAAGCCTTGGAGGTGTCTGTTCAA
ATGGGCCCATTGCTCTACTCTCTGGTCTTAATCCTCGGCCATTGAGTTTGGTTGCACACT
TCTTTGCTGTTGCTATCTTCGGTGTTGGACGGCTGATGCTCCCCCTTCCTTCACCTAAAC
GAATGTGGACTGGAGCGAGGTTGATCTCGGGCGCATGTGGTATCATCTTCCCAATTATCA
AAGCTGAAGGTGTGAGGCAAATGTTCTTCCCTGCTACCGTCCCCGCGTATTACCGTGCTC
CTCCTGAAGCGGAGTTCTGAAGTACGAAGGTGCAGCTAATCTCTTGCACCAAGGCATTTT
TCCTGTGTTGGTAGTCGTTCGCCAGTGTTAGCCGGTCGTTGAAATGTGTTGTGTTGGTAG
TCCGAATGGATCGAGGAACGTGTATAGTATCTCCGGTGGGTGCTGATCCTGTCTGTTGAA
ATGTTCTGAATTGCTGCATCGGTGCCCATGTTGATTGGTCCTAGTTAAATTGTACATTTT
TGTTGTACTACTACGGTGGTGTCCCTTGTCTACTGCGCGTGAGCTGTGCTTTCTAAATTC
TATAAATCGTAGTAGACCACTGTGTACCATGTTAAGCTGAACCCCGTTATAGACCATGAT
ATGTCTTCAGTTATACGGGCCAGCCCATCAAAAAAAAAAAAAAA

Homology of Contig U35_16514 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g12910.1	614	protein\|squalene monooxygenase, putative, expressed
Brachypodium v1_2	Bradi1g69170.1	530
Arabidopsis v10	AT1G58440.1	531	\| Symbols: XF1, SQE1 \| FAD/NAD(P)-binding oxidoreductase family protein \| chr1:21714094-21717246 REVERSE LENGTH=531