barSeed - Barley Seed Development Database

Probe CUST_19580_PI390587928

Source Contig U35_673

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19580_PI390587928	Hv_44K_v2	AAATGTACTGACACTGAGTGCGTCGATTAATACAAATTGTTGCTAGTTTTCGCCAAAAAA	1435	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253128.1	1166	2e-24	1094 - 1153	100	60 / 60	plus	ABC41094 ABC41535
MLOC	MLOC_72928.1	1847	3e-21	4 - 57	100	54 / 54	minus	ABC41094 ABC41535
JLOC1	JLOC1_48538.1	2008	2e-21	1792 - 1845	100	54 / 54	plus
Harvest21	ABC02091	1555	1e-23	1436 - 1496	98	60 / 61	plus
Harvest21	ABC41094	423	5e-23	11 - 69	98	59 / 60	minus	ABC41094
Harvest35	U35_673	1555	3e-25	1436 - 1495	100	60 / 60	plus

Contig Sequence (1555 bp)

>U35_673 1555 Hv_44K_v2
GCGATTTCCTCAAGAACCCCGACAGTACACCGCGCTCGGGGCCAAGATCCCCAAGGGATG
CCTGCTCGTCGGCCCGCCCGGGACCGGGAAGACGCTGCTCGCCCGTGCCGTCGCCGGGGA
GGCCGGGGTGCCCTTCTTCTCCTGCGCCGCGTCTGAGTTCGTCGAGCTCTTCGTCGGCGT
GGGTGCCTCCAGGGTGAGGGACCTCTTCGAGAAGGCCAAGGCCAAGGCGCCCTGCATCGT
CTTCATCGACGAGATTGACGCCGTCGGGAGGCAGCGTGGTGCGGGAATGGGTGGGGGGAA
CGATGAGAGGGAGCAGACCATTAACCAGCTGCTCACGGAGATGGACGGCTTCTCCGGAAA
CAGCGGTGTCATCGTGCTCGCCGCGACCAACAGGCCGGATGTGCTTGACTCCGCGCTTCT
GCGGCCAGGGCGGTTCGATCGGCAGGTCACCGTCGACCGTCCGGATGTAGCCGGCCGTGT
CAGGATCCTTGAGGTTCACTCCAGAGGAAAGGCATTGGCGAAGGATGTGGACTTTGATAA
GGTTGCCAGAAGGACACCTGGTTTCACCGGTGCTGATCTTCAGAACTTGATGAATGAGGC
TGCCATCCTTGCCGCCCGTCGTGATCTGAAGGAGATAAGCAAGGACGAGATCTCTGATGC
TCTGGAGAGGATCATTGCTGGGCCTGAGAAGAAGAATGCAGTTGTTTCAGAACAGAAGAG
GAAGCTTGTGGCTTACCATGAGGCTGGACATGCCCTCGTCGGTGCCCTGATGCCTGAATA
TGACCCTGTTGCCAAGATTTCCATCATTCCTCGAGGTCAGGCTGGTGGTCTCACGTTCTT
TGCTCCAAGCGAAGAGAGGCTCGAGTCTGGACTGTACAGCAGGAGCTACCTAGAGAACCA
AATGGCTGTGGCACTTGGTGGCAGGGTTGCCGAGGAGGTGATCTTTGGCCAAGACAACGT
GACAACTGGGGCATCCAGCGACTTCATGCAGGTCTCACGTGTCGCCAGACAAATGGTTGA
AAGATTTGGGTTCAGCAAGAAGATCGGGCAAGTTGCGATTGGGTCATCTGGTGGAAACCC
TTTCTTGGGCCAGCAGATGTCGAGCCAGAAGGACTACTCGATGGCCACGGCGGACATCGT
AGATGCCGAGGTCAGGGAACTCGTGGAGACGGCCTACTCGCGGGCGACGCAGATCATCAA
CACCCACATCGACATCCTCCACAGGCTCGCCAACCTCCTGATCGAGAAGGAGACCGTGGA
CGGGGAGGAGTTCATGAGCCTCTTCATCGACGGGCAGGCGGAGCTGTTTGTCGCATAAGT
CGCCCCGTCATGCCCTGTATGTTTTCGGCGGTTATACGAGGGTCCAGCTTGTAGGAACCA
CATTGATCTAGTAAAAATGTTGTTTTTGCAAACATGTTTGTATAGTTCCTTGTAAAAATG
TACTGACACTGAGTGCGTCGATTAATACAAATTGTTGCTAGTTTTCGCCAAAAAAAAAAA
AAAAATTAGATTCAGAAAAAAATAATTGTTTTTGCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_673 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g51029.1	687	protein\|OsFtsH1 FtsH protease, homologue of AtFtsH1/5, expressed
Brachypodium v1_2	Bradi1g29900.1	682
Arabidopsis v10	AT1G50250.1	716	\| Symbols: FTSH1 \| FTSH protease 1 \| chr1:18614398-18616930 REVERSE LENGTH=716