barSeed - Barley Seed Development Database

Probe CUST_19579_PI390587928

Source Contig U35_674

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19579_PI390587928	Hv_44K_v2	TAGCCATCAGAATCAGAGGATAGCTCGGCTGATTCTAGCCTAGTCTAGTTGTGAATTTAG	984	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358588	1120	2e-24	983 - 1042	100	60 / 60	plus	ABC02438 ABC02441 ABC02444 ABC02445
MLOC	MLOC_13093.1	1796	2e-24	326 - 385	100	60 / 60	plus	ABC02444 ABC02445
MLOC	MLOC_13093.2	1744	2e-24	315 - 374	100	60 / 60	plus	ABC02444 ABC02445
MLOC	MLOC_13092.1	1888	2e-24	326 - 385	100	60 / 60	plus	ABC02444 ABC02445
JLOC1	JLOC1_8831.1	791	8e-25	289 - 348	100	60 / 60	plus
Harvest21	ABC02445	1110	3e-25	968 - 1027	100	60 / 60	plus	ABC02445
Harvest21	ABC52451	685	8e-21	494 - 551	97	56 / 58	plus
Harvest35	U35_674	1135	3e-25	985 - 1044	100	60 / 60	plus

Contig Sequence (1135 bp)

>U35_674 1135 Hv_44K_v2
GGGGAAACGTCAGCGCCGGCAGCTTCGCAACCCTAGTTTTCGATTCCCACTTTCCCCGAT
CTCGAGTTCGCGCGCACTCCGGCGAACACGGCAGCGATCATGGCGGCTCGCGGGCAGGGG
CAGTTGCAAGATTTCGACTTTTTCGTGGTGGTCGACTTCGAGGCTACGTGCGTCAAAGAC
GCGCGGATCTTCCCGCAGGAAATCATTGAGTTCCCCGCCGTGCTCGTCGACGGCGCCACC
GGCCGCATGGAGTCGGCGTTTCGCAGGTACGTTCGTCCAAAACATCATCCTCTGCTAACC
CAGTTTTGCAGGGAACTCACCGGCATCCGGCAGGAGGACGTCGACGGCGGCGTGGATCTC
GGCGAGGCGCTCTGGCTGCACGACGATTGGCTGAAGGAGGCGACGGCGGGGGCAGGAAAC
AAGAGGAGCGTCCGCTTGGCCGTCGTGACCTGGGGTGACTGGGATTGCCGTACCATGCTC
GAGTTTGAGTGCCGCTTCAAGGGCATCGAGAAGCCCTCCTACTTTGATCAGTGGATAAAT
CTGAGGGTCCCCTTCCAGGCAGCGTTCGGCGGCGGAGGGCGGGTGAACCTGCAGGAGGCG
GTCCGGGCGGCGGGGCTGGACTGGGAGGGCCGCCTGCACTGCGGGCTGGATGACGCGCTC
AACACAGCGCGTCTGCTTGTCGCGATCATGCGGCGCGGCGTCAAGATTACCATTACCGGC
TCGCTGGCGCCGCCGCTATCGGCGCCGATCCTGCAGCAGCCACAGCCTCACATGAGTAGC
TATGGTGGCTACTCTGGGACGTGCTTGTGCTACTGCGGGCTGGCGAACAGAGGAGGCGTG
ATGCAGGGGAAGTGCTTCTCAGGATGCGCTAACTGGGGGCCGGCCATGGGAGCCCAGTTC
GGATGGAGCAACTGAACCAAGGATCCATGGCAGGAGACTTAGATTCAGAACATACTGTAG
CTCAGGTGCTAGTGTTAATCGTGCTAGCCATCAGAATCAGAGGATAGCTCGGCTGATTCT
AGCCTAGTCTAGTTGTGAATTTAGTCTCTAAAATCAGAAGTGACCAATGGAGCTATACAT
GTCTGAATTATTATATTATCAATAGAAATTTCATTTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_674 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43080.1	305	8e-104	protein\|exonuclease, putative, expressed
Brachypodium v1_2	Bradi1g28550.1	311	1e-115
Arabidopsis v10	None