barSeed - Barley Seed Development Database

Probe CUST_19577_PI390587928

Source Contig U35_676

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19577_PI390587928	Hv_44K_v2	CAAACTTGACCTCAGAAATTAGTGTCTACTCTTGATGTAATTGGTCTCGATTGTTATCAT	1138	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54191.1	1742	2e-24	253 - 312	100	60 / 60	minus	ABC02438 ABC02441 ABC02445
JLOC1	JLOC1_34868.1	1616	8e-25	215 - 274	100	60 / 60	minus
Harvest21	ABC02438	1276	3e-25	1131 - 1190	100	60 / 60	plus	ABC02438
Harvest35	U35_676	1236	3e-25	1139 - 1198	100	60 / 60	plus

Contig Sequence (1236 bp)

>U35_676 1236 Hv_44K_v2
CAGATCCGGCGAGCGCATGGCGAAGATGGCACCGATCATGGCGGCGCGCGGGCAGGGGCT
GGGCCATCAGGTGCAGCAAGATTTCGACTTTTTCTTGGTGGTGGACTTCGAGGCGACTTG
CGAGAAGGACGCTCGGATCTACCCGCAGGAGATCATTGAGTTTCCGGCCGTGCTCGTCGA
CGGCGCCACCGGCCTCATCGAATCCGCTTTCCGCAGGTACGTTCGCCCCAGACACCGGCC
CGTGCTGACCCAGTTTTGCAGGGACCTCACCGGCATCCGGCAGGAGGACGTAGACGGCGG
CGTGGATCTCGGCGAGGCGCTCTGGATGCACGACGCTTGGCTGAAGGCGGCAACGGCGAA
GGCAGGGAACAGGAGATGCGTCCGCTTGGCCGTCGTGACCTGGGGGGACTGGGATTGTCG
CACCATGCTGGAGTTCGAGTGTCGATTCAAGGGGATCGAGAAGCCCTCCTACTTTGATCG
CTGGATCAACCTGAGGATCCCCTTCCAGGCGGCTTTCGGTGGCGGAGGGCGGGTCAACCT
GCAGGAGGCGGTGCGGGCGGCGGGACTGGACTGGGAGGGCCGCCTGCACTGCGGACTCGA
CGACGCGCGCAACACGGCGCGGCTTCTTGTTGAGATCATGCGGCGCGGGGTCAAGATCGC
CATCACCGGCTCGCTGGCGCCGATCCAGAAGCAGCCGCCTTCCACAAGCCAATGCGGTGG
CTCATCGGCGCCACCGCTTCTGCTGCCGATCCAGCAGCAGCCGCCTCACACAAGGCCTTG
CGGTGGCTCATCGGCGCCACCGCTTCTGCTGCCGATCCAACAGCAGCAGCTGCCGCAGCC
TCACATAAGCCCCTGCGGTGGCTCCTCTGCGACGTGCTTGTGCTACTGCGGGGTGGTGAC
CAGAGGAGGCGGGGTGCCTGTGCTGGTGCCAGGGCCGATGCAGGTCAACAGCTTCTTTAG
GTGCGGCGACTGGACGCCGGCCATGAGCTTCGTGTGGACCAATTGAGCGAACGAGCCACG
GCATGAGACTGAGATTCAGAATCCAGTGCAGCTCAGCTGTTAGTGTTGATCGTGCCAGCC
ATCAGTATCAGAGTCTGAGCTGATTCTACTCTAGTCCTAGTCTAGTGGTCACTGAAATCA
AACTTGACCTCAGAAATTAGTGTCTACTCTTGATGTAATTGGTCTCGATTGTTATCATTA
ATAGTAGATTTGTTTAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_676 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43080.1	305	3e-90	protein\|exonuclease, putative, expressed
Brachypodium v1_2	Bradi1g27780.1	245	1e-110
Arabidopsis v10	None