barSeed - Barley Seed Development Database

Probe CUST_19575_PI390587928

Source Contig U35_678

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19575_PI390587928	Hv_44K_v2	TATTCGGTGTTTCAGCCGTCTGAAAATAAATTCGTTTCAGGCCGTTTTTTAGTCAAAAAA	1344	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368249	1428	3e-21	1374 - 1427	100	54 / 54	plus	ABC02438 ABC02441 ABC02445 ABC02446 ABC02447
MLOC	AK359127	1330	3e-21	1263 - 1316	100	54 / 54	plus	ABC02438 ABC02441 ABC02445 ABC02446 ABC02447
Harvest35	U35_678	1415	3e-25	1345 - 1404	100	60 / 60	plus

Contig Sequence (1415 bp)

>U35_678 1415 Hv_44K_v2
CGAACTGCGGCATCCAGTTGTGCCCTAGTTTCCGATCCCAAATTTCCCCAATCTCTGCTG
CCCTAGTTTTCGATCCCAAATTTCCCCGATCTTCGCCGCCCTAGTTCTCGATCGCAGCTT
TCCCCGATCTCAACTCCCGATCTCGAGTTTGCGCGCAGTCCGGCGAACATGGCAGCGATC
ATGGCGGCGCGCGGGCAGGAGCTGGAGCAAGATTTCGATTTCTTCGTGGTGGTCGACTTC
GAGGCGACGTGCCTCAAAGACGCGCGGATCTTCCCGCAGGAAATCATTGAGTTCCCCGCC
GTGCTCGTCGACGGCGCCACCGGTCGCATCGAGTCAGCGTTTCGCAGGTACGTTCGTCCT
AAACATCACCCTGTGCTGACCCAGTTTTGCAGGGAACTCACCGGCATCCGGCAGGAGGAC
GTCGACGGCGGCGTGGATCTCGGCGAGGCGCTCTGGCTGCACGACGCGTGGCTGAAGGCG
GCGACGGCGGGGGCAGGGAACAGGAGGAGCGGTCGCTTGGCCGTCGTGACCTGGGGAGAC
TGGGACTGCCGGACCATGCTGGAGTTCGAGTGCCGCTTCAAGGGCATCGAGAAGCCCTCC
TACTTTGATCAGTGGATCAACCTGAGGGTCCCCTTCCAGGTGGCGCTCGGCGGCGGAGGG
CGGGTGAACCTGCAGGAGGCGGTTCGGGCGGCGGGGCTGGACTGGGAGGGCCGCCTGCAT
TGCGGGTTGGACGATGCCCTCAACACGGCACGGCTGCTTGCTGAGATCATGCGGCGCGGG
GTCAAGATGACCATCACTGGCTCACTGGTGCCGCTGCCGCTGTTCGAGCAGGAGCAGCAG
CCTCGCACAAGCACCTGCGGTGGCTCACTTGCGCCGGCGCCGCCGCCGTTCGAGCAGAAG
CAGCAGCCTCGCACAAGCACCTGCGGTGGCCCACTTGTGCTGGCGCCGCCGATTCAGCAG
CAGCCGCCTTGCACAGGCCCTTGTGATGGCTCGTTTCCGCTGGTGCTGGCGCCTATCCAG
CAGAAGCAGCAGCAGTGGCCGCAGCCTCACATAATCAGCCCCTGCGGTGGCTCCTCTGCG
ACGTGGTACTGCGGGGTGGCGACAAAAGGAGGCATGGAGCCAGGGGCGATGCAGTCTGGA
TGCACCAACTGGACGCCGGCCATGGGAGCCGTGCCCCCCTACTACCTGTGGAGCAACTGA
ACCATGAGACTGAGATTTAGAATTCAGTGTCGCTCGGCTGCTAGTGTTAATCGTCCCCAT
CAGAATCAGAGTGTAGCTCAGCGGCCTAGTCTAGGTGTAAATTTGGTCTTTGAAATCCAA
CTTCCAATGGGGCTATTCTTGATGTATTCGGTGTTTCAGCCGTCTGAAAATAAATTCGTT
TCAGGCCGTTTTTTAGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_678 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43080.1	305	4e-95	protein\|exonuclease, putative, expressed
Brachypodium v1_2	Bradi1g27780.1	245	3e-107
Arabidopsis v10	None