barSeed - Barley Seed Development Database

Probe CUST_19574_PI390587928

Source Contig U35_679

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19574_PI390587928	Hv_44K_v2	CAACTTGACCAATGGGGCTATTCTTGATTTAATCGGTGTCTGAATTAGTATTACCAATAG	566	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354847	4208	2e-24	1250 - 1309	100	60 / 60	plus	ABC02438 ABC02441 ABC02443 ABC02445 ABC02447 ABC06963 ABC10558
MLOC	MLOC_80068.1	1911	2e-24	359 - 418	100	60 / 60	plus	ABC02443
JLOC1	JLOC1_53324.1	1179	8e-25	359 - 418	100	60 / 60	plus
Harvest21	ABC02443	649	3e-25	567 - 626	100	60 / 60	plus	ABC02443
Harvest35	U35_679	649	3e-25	567 - 626	100	60 / 60	plus

Contig Sequence (649 bp)

>U35_679 649 Hv_44K_v2
GGCGGCGGGGCTGGACTGGGAGGGTCGCCTGCACTGCGGGCTGGACGATGCGCTCAACAC
GGCGCGGCTGCTTGCTGAGATCATGCGGCGAGGGGTGAAGATGACCATCACCGGATCGCT
GGCGCCGCCGGCGCCGATCCAGCAGAAGCAGCAGCCTCGCAGAAGCCCGTGCGGCGGCTC
ACCTGCACTGGCGCCGCCGCCGATCCAGCAGCAGCCGCCTCGCACAGGCCCTTGCGGTGG
CTCGTTTCCGCTGCTGCCGGCGCCTATCCAGCAGAAGCAGCAGCAGCCGCCGCAGACTCC
GGCCATGGGAGTCTGGATACGGCAACTGGACGCCGGCCATGGGAGTCTGGATACGGCAAC
TGGTCGCCTGCACTGCGGGGTGGCAGGACCGATGCAATCTGGATACGGCAACTGGACGCC
GGCCATGGGAGTCCTCTGGACCAACTGAAGAATGAGACTGTGATTCAGAAATCAGTGTCG
CTCAGCTGCTAGTGTTAATCGTCCCTAGCCATCAGAATTCAGTGTCGTTCTAGCCTAGTC
TAGGTGTGAATATAGTCTTTGAAAACCAACTTGACCAATGGGGCTATTCTTGATTTAATC
GGTGTCTGAATTAGTATTACCAATAGAAATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_679 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None