barSeed - Barley Seed Development Database

Probe CUST_19570_PI390587928

Source Contig U35_16520

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19570_PI390587928	Hv_44K_v2	CCTTACGCATCTCTAAAAAATATTCGAACTTGTGCAAAACCTGAAGTCATTATGTTGCTT	2164	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.591	2.864	1.379	0.672	0.196	0.356
Raw	112.272	188.084	80.779	61.388	5.446	12.696

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_28838.2	2337	8e-25	2259 - 2318	100	60 / 60	plus
JLOC1	JLOC1_28838.1	2576	8e-25	2498 - 2557	100	60 / 60	plus
Harvest21	ABC05413	2246	3e-25	2166 - 2225	100	60 / 60	plus	ABC05413
Harvest35	U35_16520	2245	3e-25	2165 - 2224	100	60 / 60	plus

Contig Sequence (2245 bp)

>U35_16520 2245 Hv_44K_v2
GTTGTACGGTCCCCGTCCGTTTCCCACATTTTCCGCTTCCCCCATCCGTCCCTCCATTAA
CTCGTCTCCCGATTCCAACCCCCACGAAAATCCCAAAAATACTCACAGAAGCAATCCCTA
GTCCCCGAATCCCACCTCGAGGAGTATCCCGATTCGCTTCCGATCAGCGCCAACTCGATC
TGCGGCTCCATCTCAGGCGGTCCCGGGCGCGCGGTCTTGGCTCGGGAGATCCGGGATCCC
GTCCTCGGGTGCTCTGGGCTCAAATCTTGAGGCCTCTGGGCAATGTGATTAGGTCAAGGG
GCGATTTTAGGCGCAGCCGTTGCTGAATCTCTTGCGGGGTTGCAAAGATGGAGCATGTGA
TCGGGGGGAAGTTTAAGCTGGGTAGGAAGATCGGGAGCGGATCTTTCGGGGAGCTGTATC
TTGGCGTGAACATACAGAGCGGCGAGGAGGTGGCTATCAAGTTGGAATCTGTCAAATCAA
GGCATCCCCAGCTTCATTATGAGTCAAAACTATATATGCTTCTGCAAGGGGGGATGGGTA
TTCCTCATCTGAAGTGGTTTGGAGTGGACGGGGAGTACAATGTCATGGTCATTGATCTTC
TTGGTCCAAGTCTGGAGGACTTGTTCAACTATTGCAACAGAAAATTTACCCTTAAAACAG
TACTTTTGCTTGCTGATCAGATGATCGCCAGGGTAGAGTACATGCACTCGAGGGGCTTTC
TTCATCGTGATATAAAGCCAGACAACTTCCTTATGGGTTTAGGCCGTAAAGCAAGCCAGG
TTTATGTTATCGACTATGGCCTTGCAAAGAAGTACCGGGACCTCCAAACTCATAAGCACA
TACCATACAGGGAGAACAAGAATCTTACAGGAACAGCACGTTATGCTAGTGTAAACACCC
ATCTTGGAGTAGAACAAAGCAGGAGAGATGATTTAGAATCTCTCGGTTATGTGCTGATGT
ATTTCATAAGAGGAAGCCTTCCTTGGCAAGGTCTGAAAGCTGGCACGAAAAAACAGAAGT
ATGACAAAATTAGTGAAAAGAAAATGTTAACTCCAGTTGAGGTCCTTTGTAAATCTTATC
CATCGGAGTTCGTTTCATACTTCCATTACTGCCGATCCTTGCGATTTGAAGATAAACCAG
ATTACAACTATCTGAAGAAACTCTTCCGAGATTTATTTATCCGTGAAGGGTACCAGTCTG
ATCATATATTTGACTGGACTGTGTCAAGGCAAGTAGCAGAGAATAACAGATTGCGACCAA
GTGGAAGGACAGCTGGGTTGGTGGGACCATCTGCAGAACGGGCTGAACGGGTTGCAGCAA
GACAGGATGTTCCTGATAGATTCTCTGGTTCAGTGGATACATTTGCCAGAAGAACTGGCT
CTGGTTCTGGCCATCATGCAGAAAACACGAAGCACAGAACTTTGTTGGATTCACTGTTGG
CACCTAAGATGGCTGTTGATTCAGATAAAAGAAGGCCTACATCATCCCGGAATGGGAGCA
CATCGAGGAAGGCTCTCCTGTCAAGTAGCAGACCAAGTTCTGGAGAGCCCAGTGACCCGA
CTCGCACTAGCCACCTAATCCCAACCAGTAGTGGCAGCAGTCGTCCATCAACCACTCAGA
GGCTTCACCAATCAACTGGACTCGAGGCCAGGTCCTCGTCGCTGTCGAAAACTGCAAGAA
ATATCCATGATGATCCCACTCTAAGGACATTTGAGCGCCTTACAATTAGTGCAGACCGGA
GGAAATAAAAGTTTGAAGAGTAAAAGGATGTCAGTTGCTGTCATGAGTGTGGGCACTTGG
ATTCTTTCAGCTCCAGATGATGCTCACTGGTCAGCAAGATAAATGATGTGCTACACAAGA
TGCCGAGGAATGCATATAGCGAAGGGGGCTCATCGAATCTTGGCATGAATGATCGAGCAC
TGTTATTTCAATGTCTGTTCTTTTGAATGGCTAAAGAAAACGTTTTACACCATTCTGGAG
GGCCTGGATTGTCTCGGCTGCATTGTTTGGCCGTGCTGGCCTAATTGATGTTAATGTTGA
CTCAAGACACTTGTGGACACGCTATTCAAATAAAACAGTTCATTAGACTTTCAAAAAAAA
AAAAAAAAATTTTTATTGTACCTGCACATGAAAGTGTTAATGCTTGTGTTTGGGTGTACT
GGTTCCTTACGCATCTCTAAAAAATATTCGAACTTGTGCAAAACCTGAAGTCATTATGTT
GCTTTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16520 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g40860.1	464	protein\|CK1_CaseinKinase_1.5 - CK1 includes the casein kinase 1 kinases, expressed
Brachypodium v1_2	Bradi3g49100.1	467
Arabidopsis v10	AT4G14340.1	457	\| Symbols: CKI1, CKL11 \| casein kinase I \| chr4:8248532-8251668 REVERSE LENGTH=457