barSeed - Barley Seed Development Database

Probe CUST_19567_PI390587928

Source Contig U35_16522

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19567_PI390587928	Hv_44K_v2	GGCGTACTTTGCTTCCCCTGTGTTATCCCTAATAATATATCAATTGGCCTAATGATTATA	543	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14078.1	662	7e-23	593 - 652	98	59 / 60	plus	ABC05242 ABC05243
JLOC1	JLOC1_9588.1	760	8e-25	591 - 650	100	60 / 60	plus
Harvest21	ABC05242	622	3e-25	544 - 603	100	60 / 60	plus	ABC05242
Harvest35	U35_16522	622	3e-25	544 - 603	100	60 / 60	plus

Contig Sequence (622 bp)

>U35_16522 622 Hv_44K_v2
GGCCTGTGCATCTAATGTGCGCCGCCTCCTCCTCCTCCACTCCGGCGCCGGAGCTCGGGC
GAGATCTTTCTACGCCCAGCCCTACCAAGCCAAGGTTGGCGTGGTGGAGTTCTTGAATGG
GGTCGGGAAGGGGGTGGAGACGCACGCCGGGAAGCTGGAGGAGGCTGTAGGTGGCGATCT
CCAGAGGCTGCTCGAGACCCGCACGCTACGCCTCAAGAAGCTCGGCGTCCCCTGTAAGCA
TAGAAAGTTGATTTTGAGTTTCGCTCACAAGTACCGTCTTGGTCTTTGGAAGCCCCCGGC
AGAAGCCAGGAAAGTGCAATAAAGTTGGTTTGTTTTCAAGCGTCCACTTGGAGAAATTCA
TGCTTGAGGCATCGAATAGTTGTGTTGTAATTTGGATGCCGCAATTAAAATGTTATCTGA
TAATTGATAAACTCTTATGCACATCCAACCAATAACTGGCCCACTTGATGGTACTCTTTT
GTAGGATTCTCTTTGTTAGGTTTGGGAATCATCACTCTTATATTGTTCTAAAGTGAGTCG
GCTGGCGTACTTTGCTTCCCCTGTGTTATCCCTAATAATATATCAATTGGCCTAATGATT
ATACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None