- Probe CUST_19566_PI390587928
- Source Contig U35_16523
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19566_PI390587928 | Hv_44K_v2 | CGAAAAACAAGAAGGGAGATTCCAATGCACTAACATTCCAGAGAAAGTTGATTTTGAGCT | 81 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.270 | 0.349 | 0.888 | 1.875 | 1.124 | 1.420 |
| Raw | 47.310 | 99.374 | 220.384 | 721.096 | 149.890 | 208.883 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_38497.2 | 798 | 2e-24 | 306 - 365 | 100 | 60 / 60 | minus | ABC05243 |
| JLOC1 | JLOC1_25038.1 | 701 | 8e-25 | 186 - 245 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16523 | 490 | 3e-25 | 82 - 141 | 100 | 60 / 60 | plus |
Contig Sequence (490 bp)
>U35_16523 490 Hv_44K_v2 GAGGCGGCGATCTCCAGAGGCTGCTCGAGACCCGCACGCTGCGGCTCAAGAAGCTCGGCG TCCCCTGCAAGCATGTAAAACCGAAAAACAAGAAGGGAGATTCCAATGCACTAACATTCC AGAGAAAGTTGATTTTGAGCTTTGCTCACAAGTACCGTCTTGGTCTTTGGAAGCCCCCAG CAGAAGCCAGGAAGGCGCAATAAAAGTTGGTTTGTTTTTGAAGTGTCGACTTGGGGAACT AGGTGCTGTTGTTGGGCTGAAGCATGCTTGTGACATTGAATAATTGTGTGCTGTAATCTG GATGCCGCAATCGGAATGTTCTTCAAATCCAACCTATAACTGGCCTTGTTGATGCTACTC AGGATTTCTCTTTGTTAGGTTTGGGCAGAAACCTTCATCACCCTATTGTTACTAAGTGAC TGTTGTCCTTTTTTCAATTGGACAAGGCCCGCAGGGGCTTGATAATTGCACTGAAAAAAA AAAAAAAAAA
Homology of Contig U35_16523 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |