barSeed - Barley Seed Development Database

Probe CUST_19563_PI390587928

Source Contig U35_16524

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19563_PI390587928	Hv_44K_v2	GTTTGGGCAGAAACCTTCATCACCCTATTGTTACTAAGTGACTGTTGTCCTTTTTTCAAA	688	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252698.1	805	6e-24	696 - 754	100	59 / 59	plus	ABC05242 ABC05243
MLOC	MLOC_38497.1	859	6e-24	140 - 198	100	59 / 59	minus	ABC05243
MLOC	MLOC_38497.2	798	6e-24	10 - 68	100	59 / 59	minus	ABC05243
JLOC1	JLOC1_25038.1	701	3e-24	483 - 541	100	59 / 59	plus
Harvest21	ABC05243	807	1e-24	689 - 747	100	59 / 59	plus	ABC05243
Harvest35	U35_16524	792	3e-25	689 - 748	100	60 / 60	plus
Harvest35	U35_16523	490	1e-24	379 - 437	100	59 / 59	plus

Contig Sequence (792 bp)

>U35_16524 792 Hv_44K_v2
GCGGCGCTCCCCATCCCACCACGCCTCTCCACCGCCCCTCTGCTCCGACAGTGACTCCAC
CTTGACGGCGGCAGCGGACAGCGCCTCCCTCCCGTGCGTGGAGCCGCCTAGGCTGACGCC
TCCTCCCTGCGTGCGTGGCAACGTCCAGGCCGGCGTCTCCCTCCCGCGCGTGGCGTCCCG
GGGGCCATGGCCTTCGCGTGCGCATCTCACGTGCGCCGCCTCCTCCTCCTCCACCCCGGC
ACCGGAGCTCCGGCGAGATCCTTCTACGCCCAGCCCTACCAAGCCAAGGTGGGCGTGGTG
GAGTTCCTGAACGGCGTCGGGAAGGGGGTGGAGGCGCACGCCGCCAAGTTGGAGGAGGCT
GTGGGCGGCGATCTCCAGAGGCTGCACGAGGGCACGCTGCGGCTCAAGAAGCTCGGCGTC
CCCTGCAAGCATAGAAAGTTGATTTTGAGCTTTGCTCACAAGTACCGTCTTGGTCTTTGG
AAGCCCCCAGCAGAAGCCAGGAAGGCGCAATAAAAGTTGGTTTGTTTTTGAAGTGTCGAC
TTGGGGAACTAGGTGCTGTTGTTGGGCTGAAGCATGCTTGTGACATTGAATAATTGTGTG
CTGTAATCTGGATGCCGCAATCGGAATGTTCTTCAAATCCAACCTATAACTGGCCTTGTT
GATGCTACTCAGGATTTCTCTTTGTTAGGTTTGGGCAGAAACCTTCATCACCCTATTGTT
ACTAAGTGACTGTTGTCCTTTTTTCAAAAAAAAAAAAAAAAAGGCCCGCAGGGGCTTGAT
AATTGCACTGAA

Homology of Contig U35_16524 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g05940.1	105	9e-53	protein\|expressed protein
Brachypodium v1_2	Bradi2g11457.1	106	4e-56
Arabidopsis v10	None