barSeed - Barley Seed Development Database

Probe CUST_19562_PI390587928

Source Contig U35_16525

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19562_PI390587928	Hv_44K_v2	TTATGGGATTGCTAGTGATGAAAGTTGCACCAGGGGTGCTTGTATTCCCAACGATCTGAA	2257	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.595	2.115	1.448	0.872	0.329	0.304
Raw	287.908	619.383	367.133	333.810	46.180	46.464

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72183.3	2000	2e-24	354 - 413	100	60 / 60	plus	ABC05260
MLOC	MLOC_72183.4	2998	2e-24	793 - 852	100	60 / 60	plus	ABC05260
MLOC	MLOC_72183.2	1604	2e-24	359 - 418	100	60 / 60	plus	ABC05260
Harvest21	ABC05260	2851	3e-25	2258 - 2317	100	60 / 60	plus	ABC05260
Harvest35	U35_16525	2851	3e-25	2258 - 2317	100	60 / 60	plus

Contig Sequence (2851 bp)

>U35_16525 2851 Hv_44K_v2
GAGGCTCCCATCCCATCCGCTCCCCCTCTCTCTCACTGTCAGCGACGCTTCCGGCCGCCC
TCCCGCGCCGCTCGCCGGACCCGCCGTTTCTCAGGAAATGGCTGCGCTGCAACCGTCCTT
CTCGTCACTGATGGCTATGAATAATGGCTGCAACACCATGAAGTTCCCTAAGACTGCACT
TTTGCCTGGTTTCGGTGGCATTTCGCGCCCTCAGGATGTGCAGGACAGGAATGCCAGCCT
CACCTGTTCAAGGCCTAGGGCAGTCTCAGTGACTGATCAGTCAGTAGCAGAGCCAGCAAA
ACCCAGGCAATCTAAACATACAGTTGATCCCGCTGCTCCAGAATTTCTGCCGCTCCCAGC
ATTTGAAGACTGCTTCCCACGGAGCACCAAAGAATGCAGTGAAGTTGTTCATGAGGAATC
AGGTCATGCCCTGAAGGTTCCATTTCGGAGAGTCCATTTGACCGGAGATAGCGGGCATTT
TGATACATATGACACCAGTGGTCCACAAAACATAAGCCCAAGGCTTGGACTCCCAAAGAT
AAGAAAGGAATGGATTGACAGGAGGGAGAAATTGGGTAGTCCTCGATACACCCAAATGTA
CTATGCTAAGCAGGGAATCATAACAGAGGAGATGTTGTACTGTGCCAAACGTGAGAACCT
TGCTCCTGAATTTGTCCGGTCAGAAGTCGCCCGTGGACGAGCCATTATCCCTTCCAACAA
GAGGCACCTGGAATTGGAACCCATGATTGTTGGAAGAAACTTCCTTGTAAAGGTGAATGC
AAACATTGGGAATTCAGCTGTTGTGAGCTCCATTGAGGAGGAAGTCCACAAGCTCCAGTG
GGCCACAATGTGGGGAGCAGATACAGTCATGGACCTTTCAACAGGGCGCCATATCCATGA
GACCCGGGAATGGATTATTCGTAACTCTTCGGTTCCTATTGGAACTGTTCCTATTTACCA
AGCACTTGAGAAAGTTAATGGTATTGCTGAAGATCTGAGCTGGGAAGTCTTTAGGGAGAC
TTTAATTGAACAAGCCGAGCAGGGTGTTGACTATTTCACCATCCATGCTGGTGTGTTGCT
TCGTTATATTCCTCTCACAGCAAAGAGAATGACTGGCATAGTTTCTCGTGGTGGATCAAT
CCATGCAAAATGGTGTTTAACGTATCACAAGGAGAACTTTGCTTATGAGCATTGGGATGA
CATTCTTGACATATGTAACCAGTATGATGTGGCATTATCAATTGGTGATGGCCTGAGGCC
TGGTTCTATTTATGATGCTAATGATAGCGCTCAGTTTGCAGAACTGCTGACTCAAGGGGA
ACTAACTCGCCGAGCATGGGAGAAAGATGTACAGGTGATGAATGAAGGTCCTGGGCATAT
TCCGATGCATAAAATTCCTGAAAATATGGAGAAACAGCTGGAGTGGTGCAACGAAGCACC
TTTCTATACGCTGGGTCCATTGACAACTGATATTGCACCTGGTTATGATCACATCACCTC
AGCCATTGGTGCTGCCAACATTGGGGCTCTTGGCACCGCACTTCTTTGTTATGTAACACC
AAAGGAGCACCTTGGGTTGCCTAACAGGGATGATGTTAAGACAGGTGTGATATCCTACAA
AATCGCTGCTCATGCTGCTGATTTGGCAAAGCGTCACCCCTATGCACAAGCATGGGATGA
TGCACTAAGCAAGGCAAGGTTTGAGTTTAGATGGTTGGACCAATTTGCTTTATCCCTGGA
TCCAGTTACTGCAATGTCTTTCCATGATGAAACACTACCATCTGATGGTGCCAAAGTAGC
ACATTTCTGCTCCATGTGTGGTCCCAAGTTTTGCTCGATGAAAATCACGGAGGATATTAG
AAAATATGCTGATGAACATGGTTACGGGACAGTAGAGGAAGCTGTGAGGCAAGGAATGAG
TGATATGAGTGCTGAATTTTTGGCTGCAAGAAAAACAATTAGTGGCGAACAACATGGTGA
AGCTGGAGGGGAGATCTATGTGCCAGAAAGCTACGTAGTTCAAAAATAAGATGTCCTTGG
CAGCCGTCTGATCGAGGTGATGCAGATTTGATGGCCAGGCCGTTTGCCAGCAGCACTTCT
ACCATCTTTTGTTAGGAGGTGGTAAGCAGGATATATGCCTCAATAAAGCTACTGCTGCTT
AGCGTCAGTTTTTAATGTCATTATGGATTATGGGTTGTAATAAAAGTGAACTCTATATTG
TGTTTCTTATGTTACAAGTACTTGTCTTTGCATATCATTATGGGATTGCTAGTGATGAAA
GTTGCACCAGGGGTGCTTGTATTCCCAACGATCTGAAGGCCCCTTAGCCTGGATCGTTGC
GATATGGGCTGAGAAAGTCCCTTTGAACCTGAACAGGATAATGCCTGCGAAGGGAGTGTG
CATTTCTATTTTCATGTTTCCCAGGATACATTCGACCCTCGACATTCTGGGAATCGAGGG
ACCAAGTTTTCCTGAATGTGTGGAGCGCACCCACTGGATATGCATGTTTCCTTCTCTGAC
GCAACATGGTAATGTACACGATTTCTTGAACCAGCATACATATTGGCATTTCTCCAAGAG
GAGAGAATATTTACAGTCATAGTGTTATCATGGAACACATAAAATTTAGTCATACGTGTG
GCTAGTTTAGTCCAACTTCATAAGCCCATCACATTTTTTTTGGAGGAATCCCATTACATC
TTGCAAAGCATTCACAATGCCCGGTGTAATTTTACCTTTTTACCCCTATCCATGTACATA
TTTCTGTAGCATAGTAGAAGATGTAACTAGACTAACAGATTGGAATGGTTTGTACATGCC
ACTTGTCATTTCAGAACAAAAGCACCAGCTA

Homology of Contig U35_16525 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g47610.4	640	protein\|thiamine biosynthesis protein thiC, putative, expressed
Brachypodium v1_2	Bradi1g12550.1	644
Arabidopsis v10	AT2G29630.2	644	\| Symbols: THIC \| thiaminC \| chr2:12667395-12669569 FORWARD LENGTH=644