barSeed - Barley Seed Development Database

Probe CUST_19559_PI390587928

Source Contig U35_680

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19559_PI390587928	Hv_44K_v2	CTCGGTGCATTTTCAGATGAAACGAAGACAAATTCACTGAGAAGGAACATAATTAAAATG	608	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3902.1	674	2e-24	386 - 445	100	60 / 60	minus	ABC02444 ABC02445
JLOC1	JLOC1_2353.1	673	8e-25	385 - 444	100	60 / 60	minus
Harvest21	ABC52451	685	3e-25	621 - 680	100	60 / 60	minus
Harvest21	ABC02444	1151	3e-25	609 - 668	100	60 / 60	minus	ABC02444
Harvest35	U35_680	1151	3e-25	609 - 668	100	60 / 60	minus

Contig Sequence (1151 bp)

>U35_680 1151 Hv_44K_v2
GCGGAGATGGCGCACGACTAGTCCCCCCAGAGAAGGAGGCGTGTGCTCCACAGGGACGGC
TGCAGGTAGGAGATCTGTTGGCCTGGAGAGGAGCTCGATGGAGCTGCCCCGTAGTGGTCT
CCACCAGCAAGCTCCAGTCGGTGGTAGTCACCGCCGCTGATCCAGCAGCAGCCGCCTCGC
ACAGGCCCATTGGCGTTGGCGCCACCGCTGATCCAGCAGCATCAGCTGCTGCCGCAGCCT
CACATAAGCAACCGTGGTGGCTACTCTCCGGCCTGCTTGTGCTACAGCGGACCGGCGATC
AGAGGAGGCGTGATGCATGCGAAGTGCTTCGCGGGATGGCACCAACTGGGTGCCGGCCAT
GGGAGCCGGGTTCACATGGAGCAACTGAACCAACTTCGCCTGGAGCAACTGAACCAAGGA
TTCATGACATGAGACTTAGATTTAGAATCCAATGTAGCTCAGCTGTTAGTGTCAATCGTG
CTAGCCATCAGAATCAGAGGGTAGCTCGGCTGATTCTAGCCTAGTCCAGTTTTGAATTTG
GTCTCTGAAGTCAAAAGTGGGCAATGTGGCTATACGTGTCTGAATTATTATATTATCAAT
AGAAATTTCATTTTAATTATGTTCCTTCTCAGTGAATTTGTCTTCGTTTCATCTGAAAAT
GCACCGAGCACGACCGGGAAGCTACCATGCTTGCAACCATGATGTTGCCGGCCGCCACCC
GCTCGGTTCAGAGGCTTGCTCGACAACCGATGTCCAGATGAGGGATGGATCTGGCTCTAT
GGTATAAGATGCAATAATGTGTGATGCCTGGGTGGGAAAAGCACACACTTCTACTTAAAA
TATTAGTGGAAGCACCTTGTATTTGCTGGATTTGAGAATCTAAAACATTGCTCTTGTCTT
GNCGGCCAACAAATGTTTCTGCCTTGATGCCAGAAGTATTTCTTCCCATCCAATCTTGTT
CTTTGNTGNTCCGTAAATGCCATGGGTTGGATCCTTCTTTNTTAGGAGTTTTCGCTTGAG
TGAAAATGTCTCTTCTGCCTTTNCTTGCACAACAGTATCATGCTGCCTTTNCATATGATT
GATCTCTATATTAATATGGGCTATTAAAGCATCCTTATCCATTGGTTTCAGGTACGATGG
ATCACCAAAAA

Homology of Contig U35_680 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None