barSeed - Barley Seed Development Database

Probe CUST_19549_PI390587928

Source Contig U35_28501

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19549_PI390587928	Hv_44K_v2	CTTCATTGGATTCAGATTTTTATCCCGCTCGCAAGTTTAATACCCCAAACCACAGGCACT	645	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.432	0.884	1.515	1.025	0.885	0.873
Raw	74.491	61.782	106.589	105.849	34.995	37.908

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62261.1	1971	2e-24	611 - 670	100	60 / 60	plus	None
JLOC1	JLOC1_40728.1	1952	8e-25	289 - 348	100	60 / 60	plus
Harvest21	ABC27419	708	3e-25	646 - 705	100	60 / 60	plus
Harvest35	U35_28501	708	3e-25	646 - 705	100	60 / 60	plus

Contig Sequence (708 bp)

>U35_28501 708 Hv_44K_v2
GGCAGCATAAGCAAATTGATCGCCCCCCTTTGGCTGTCAGTACTAAACCAAAAGTTCTTC
TGGTACCAAGAACTGAACCGCCAAAGGCTGTGAAGGGATCAACTCAAAGAACAATTGAAG
TTAGCAAGGATATAAAGAGACAAAAGAAAGGCCTGAAAGCAGACGAAGTGGAAAACTTAA
AAGCTTGCCAGCTTGAATTTGGGAGCTACTGCCTCTGGTCAACAGAATACAAAGTAATTA
TGAAGGATTCAGTAGTGAAAAGGCTAAAAGACCAACTATTCCTGGCCCGCTCATACTATC
CAAGCATTGCCAAACTTCAAGGACAGGAGGCACTTACTCAGGAAATGAAGCAAAATATAC
AAGACCATGAGAGGGTTCTCAGTGCAGCTGCTGTTGATGCTGATCTACCATCCTTTATCA
ATAAGAAGATAGAGCAGATGGAGCGCACAATAGCAAGAGCGAAATCATGCACTGTGGAAT
GCCACAATGTTGTCAGGAAGCTTCGGCAGATACTTGATATGACCGATGATGAAGCTCATT
TTCATATGAAGCAGAGTGCATTCCTCTACAATCTTGGTTCTCAGACATTGCCAAAAACTC
ACCACTGTTTCTCTATGAGGTTGACATTGGAATATTTCAAATCCCCTTCATTGGATTCAG
ATTTTTATCCCGCTCGCAAGTTTAATACCCCAAACCACAGGCACTATG

Homology of Contig U35_28501 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48370.1	626	1e-116	protein\|glycosyl transferase, family 8, putative, expressed
Brachypodium v1_2	Bradi1g17570.1	622	1e-127
Arabidopsis v10	AT2G38650.1	619	9e-65	\| Symbols: GAUT7, LGT7 \| galacturonosyltransferase 7 \| chr2:16161856-16165523 REVERSE LENGTH=619