barSeed - Barley Seed Development Database

Probe CUST_19548_PI390587928

Source Contig U35_686

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19548_PI390587928	Hv_44K_v2	CTTTTGGTATGAGAAGTACAACCAATACATGCATTCATCCTCTTTGGCGAAGCTAAAAAA	1320	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.354	1.610	1.162	0.727	0.282	0.247
Raw	154.234	166.551	105.314	103.165	14.140	13.296

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_686	1390	3e-25	1321 - 1380	100	60 / 60	plus

Contig Sequence (1390 bp)

>U35_686 1390 Hv_44K_v2
AGTTCGTCCACGGCTCCACGCCACGCTTCGACGCTTTCAGGCCGTGCCCAAACCCTAGCC
CCCATCCTACCTGGAGTCCGCGCCGCCACCCTCCCCTCCCCCTCCCCCTCCCGGACGAGG
TTGCAGCCATGGCGGTCGGCAAGAACAAGCGCATCTCGAAAGGTCGGAAGGGAAGCAAAA
AGAAAACGGTCGATCCCTTCACCAAGAAGGACTGGTATGACATAAAGGCGCCGACGTTGT
TCAACACCCGCAACATCGGCAAGACCCTCGTCTCCAGGACACAGGGGACCAAGATTGCAT
CTGAGGGTCTTAAGCACAGAGTTTTTGAGGTTTCCTTGGCAGACCTCCAGGGTGATGAGG
ACCAGGCTTTCAGGAAGATCAGACTTCGTGCAGAGGATGTGCAAGGAAAGAATGTTCTCA
CAAACTTTTGGGGTATGGATTTCACCACCGACAAGCTTAGATCACTTGTAAGGAAGTGGC
AGACACTAATTGAGGCCCATGTTGATGTTAAGACCACTGACAATTACATGCTCCGGCTGT
TCTGCATTGGCTTCACTAAGAGACGTCCCAACCAAGTGAAACGGACTTGCTATGCTCAGG
CGAGCCAGATCAGACAGATTCGCCGGAAGATGGTTGAGATTATGGCCAACCAGGCTTCAA
CCTGTGACTTGAAAGAGCTGGTTTCAAAATTTATACCTGAGGTCATTGGCAAGGAGATCG
AGAAGGCAACATCAAGCATTTTTCCTCTCCAGAATGTGTATGTCCGCAAGGTTAAGATCC
TTAAAGCTCCGAAGTTTGATATTGGGAAGTTGATGGAGGTACATGGTGACTACAACAAGG
AGGATGTCGGTGTGAAGTTGGAGAGGCCAGCTGAGGCAGATGAGGCAGGGGTTGAGGTTG
CAGCTCCAGCTGAATAGAGATGTTCAGTGTCTTGATTCATAAGATGTGTGTGCTATGCTT
TCCAAGTTATGGACGACGTAGACTTGATTCAGTTTTGATGCCTGCTTTTGCTATTATCTT
TTGCGTTCAGTTTCTTGGAGCAAATCAAGGAGCTGATGATTCGTGATTTCATGGGTTGAG
GTTGCAGCTGCAGCTGAATAGAGATGTTGCAGTGTCTTGATTCATAAGATGTGTGTGCTA
TGCTTTCCAAGTTATGGATGACGTAGACTTGATTCAGTTTTGATGCCTGCTTTTGCTATT
ATCTTTTGCGTTCAGTTTCTTGGAACAAATCAAGGAGCTGATGATTCGTGATTTCATGCC
TTGTTTGACTTCATTTTATTTTATTGTAGTTCTATTTGCTCTCCTGTTATAGCCTATTAA
CTTTTGGTATGAGAAGTACAACCAATACATGCATTCATCCTCTTTGGCGAAGCTAAAAAA
AAAAAAAAAA

Homology of Contig U35_686 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g10340.1	263	2e-148	protein\|40S ribosomal protein S3a, putative, expressed
Brachypodium v1_2	Bradi3g01210.1	266	3e-149
Arabidopsis v10	AT4G34670.1	262	1e-134	Ribosomal protein S3Ae \| chr4:16548724-16550222 FORWARD LENGTH=262