barSeed - Barley Seed Development Database

Probe CUST_19546_PI390587928

Source Contig U35_687

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19546_PI390587928	Hv_44K_v2	CTGGGTGTTGTTTCTGTGAATTAACCTATCGAATATGAGCGTTGTGTATATTGTGATTCT	1142	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.058	1.541	1.000	1.365	0.833	0.820
Raw	915.077	2232.681	1190.130	2625.811	543.562	590.230

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1852.1	682	2e-24	24 - 83	100	60 / 60	minus	ABC49647
JLOC1	JLOC1_1125.1	693	8e-25	594 - 653	100	60 / 60	plus
Harvest21	ABC02195	1250	3e-25	49 - 108	100	60 / 60	minus
Harvest35	U35_687	1250	3e-25	1143 - 1202	100	60 / 60	plus

Contig Sequence (1250 bp)

>U35_687 1250 Hv_44K_v2
GCCCCTCTCCCCTCCCACTTCACCCAACCACCTGACAGCCATGGCTCCGCCACCTCGCCT
CCGCCCGCGCCTCTCGGAGTAGCCGTCGCGGTCGCTCGCTGCTGCCGGTGTTGGCCCGGT
CCTCGAGCGGAGATGGGGCGCGGGAAGGTGCAGCTGAAGCGGATCGAGAACAAGATCAAC
CGCCAGGTCACCTTCTCCAAGCGCCGCTCGGGGCTGCTCAAGAAGGCGCACGAGATCTCC
GTGCTCTGCGACGCCGAGGTCGGCCTCATCATCTTCTCCACCAAGGGAAAGCTCTACGAG
TTCTCCACCGAGTCATGTATGGACAAAATTCTTGAACGGTATGAGCGCTACTCTTATGCA
GAAAAGGTTCTCGTTTCAAGTGAATCTGAAATTCAGGGAAACTGGTGTCACGAATATAGG
AAACTGAAGGCGAAGGTTGAGACAATACAGAAATGTCAAAAGCATCTCATGGGAGAGGAT
CTTGAATCTTTGAATCTCAAGGAGTTGCAGCAACTGGAGCAGCAGCTGGAAAGCTCACTG
AAACATATCAGAGCCAGGAAGAACCAACTTATGCACGAATCCATTTCTGAGCTTCAGAAG
AAGGAGAGGTCACTGCAGGAGGAGAATAAAGTTCTCCAGAAGGAACTTGTGGAGAAGCAG
AAGGCCCAGGCGGCGCAGCAAGATCAAACTCAGCCTCAAACCAGCTCTTCTTCTTCTTCC
TTCATGATGAGGGATGCTCCCCCTGTCGCAGATACCAGCAATCACCCAGCGGCGGCAGGC
GAGAGGGCAGAGGATGTGGCAGTGCAGCCTCAGGTCCCACTCCGGACGGCGCTTCCACTG
TGGATGGTGAGCCACATCAACGGCTGAAGGGCTTCCAGCCCATGTAAGCGTACTATTCAG
TACGAGTAACAAGTTGCACCGGCCAGCCTGGTGTATCATGCGGTTGCGAACATGCTAACC
CCATGGAGGGGAGAGGAAAAGAAATCAGAGTAAAGTAGCAAGCTGCAGGAATGTGTATAT
TTCACTTCGTCCACCTCAGTTTCCTTTCCACCTGGGCTGAGATGGCTGTACGAGTAATCT
ACCATGTAATTTATATGTAGCATGAGTGACGAATTTTCAACTTTCGATGATACCCGTTGC
TCCTGGGTGTTGTTTCTGTGAATTAACCTATCGAATATGAGCGTTGTGTATATTGTGATT
CTTGAAAATAAATAAATCAGGACCTTATGTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_687 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g54160.2	247	2e-108	protein\|OsMADS14 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi1g08340.1	244	1e-112
Arabidopsis v10	AT1G69120.1	256	2e-72	\| Symbols: AP1, AGL7 \| K-box region and MADS-box transcription factor family protein \| chr1:25982576-25986102 REVERSE LENGTH=256