- Probe CUST_19545_PI390587928
- Source Contig U35_28503
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19545_PI390587928 | Hv_44K_v2 | TTCAAAGGTCATTGTCACATCTGCAGACTCAAGAAATCCGAGTCGTTGATGGCTTTGAAC | 606 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.839 | 0.832 | 2.112 | 2.263 | 2.114 | 1.054 |
| Raw | 7.319 | 9.727 | 24.801 | 45.669 | 13.466 | 7.498 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369512 | 3251 | 3e-22 | 2083 - 2141 | 98 | 59 / 60 | plus | ABC20389 |
| MLOC | MLOC_18723.2 | 1738 | 3e-22 | 1619 - 1677 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_18723.4 | 2525 | 3e-22 | 1521 - 1579 | 98 | 59 / 60 | plus | ABC20389 |
| MLOC | MLOC_18723.5 | 2515 | 3e-22 | 1511 - 1569 | 98 | 59 / 60 | plus | ABC20389 |
| MLOC | MLOC_18723.1 | 2329 | 3e-22 | 1552 - 1610 | 98 | 59 / 60 | plus | ABC20389 |
| JLOC1 | JLOC1_12963.3 | 2937 | 1e-22 | 1525 - 1583 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_12963.2 | 2959 | 1e-22 | 1547 - 1605 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_12963.1 | 2948 | 1e-22 | 1536 - 1594 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC27428 | 669 | 3e-25 | 607 - 666 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28503 | 669 | 3e-25 | 607 - 666 | 100 | 60 / 60 | plus |
Contig Sequence (669 bp)
>U35_28503 669 Hv_44K_v2 TGCAGNAATTCGCACCGGGTCGGGTCCTGCAGAGGCAGCCATTGGNGAGAAGAAGCTGCC GGCAAAGGCTCTGCACAGTCCTAGATCTGTGACCTCGGACAGATTGATGGTGCCAGAGCA TGTGTTTGCACTGTCAGAAAAGCCTGTTATAACCTTCGCAGGGCATTCAAAGGATGTGCT TGATCTCTGCTGGTCCAAATCTCAGTACTTGCTTTCATCATCAATGGATAAAACTGTACG GTTGTGGCACATGTCAAGCACTTACTGTTTTAAAGCCTTCTCCCACAGCGACTATGTGAC TTGCATCCAGTTCAACCCTGTTGATGATAGATACTTCATTAGTGGTTCCCTGGATGAAAA GGTTCGAATCTGGAGTATACCGAAACGTGAAATTGTTGATTGGGTCGATCTACACGAAAT GATTACTGCTGCATGTTATTCCCCTGATGGACAGAGTGCACTCATTGGCTCCCATAAGGG CAATTGCCATGTGTATGACACATCTGATAATATGCTTTCTTACAAGAAACAAATTGACCT GCAACTCAAGAAAAAGAGATCCAGTCAGAAGAAAATCACAGGATTCCAGTTTATCCCAGG AAGTTCTTCAAAGGTCATTGTCACATCTGCAGACTCAAGAAATCCGAGTCGTTGATGGCT TTGAACTAC
Homology of Contig U35_28503 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g42590.1 | 773 | 9e-109 | protein|WD-40 repeat family protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g49817.1 | 797 | 5e-113 | |
| Arabidopsis v10 | AT5G54200.1 | 825 | 1e-82 | Transducin/WD40 repeat-like superfamily protein | chr5:21993565-21997076 REVERSE LENGTH=825 |