barSeed - Barley Seed Development Database

Probe CUST_19540_PI390587928

Source Contig U35_22120

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19540_PI390587928	Hv_44K_v2	TCTCTTTCGCGTGAGCTACCAAGAGTGGCGACAGTAGTGGAGAGTGGCAGAGAATGGTGG	55	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372846	1251	2e-24	53 - 112	100	60 / 60	plus	ABC16714
MLOC	MLOC_56204.1	1435	2e-24	125 - 184	100	60 / 60	plus	ABC16714
MLOC	MLOC_56204.2	874	2e-24	109 - 168	100	60 / 60	plus	None
MLOC	MLOC_56204.4	841	2e-24	51 - 110	100	60 / 60	plus	None
MLOC	MLOC_56204.3	1356	2e-24	66 - 125	100	60 / 60	plus	ABC16714
JLOC1	JLOC1_36336.1	1341	8e-25	96 - 155	100	60 / 60	plus
Harvest21	ABC18198	519	3e-25	47 - 106	100	60 / 60	plus
Harvest21	ABC18197	602	1e-23	41 - 100	98	59 / 60	plus
Harvest35	U35_22120	528	3e-25	56 - 115	100	60 / 60	plus
Harvest35	U35_22119	602	1e-23	41 - 100	98	59 / 60	plus

Contig Sequence (528 bp)

>U35_22120 528 Hv_44K_v2
ACCCATCATCCCTCTCCTTGCTCCACGACACGGCCGGCGTGCGTGCCTGTGGTTATCTCT
TTCGCGTGAGCTACCAAGAGTGGCGACAGTAGTGGAGAGTGGCAGAGAATGGTGGCGCCC
GGCCTGACCAGAGCAGAGCTGAGCTGAGATCCTCCTTTGCGCATGCTTCCTTCTCCTTGC
TCCGTCGCGGCGTGCGGCGCTCGTGCGTTCCGGCGCTTGGCTGTGGCCGCCGTCAGCCTC
CCGATGCTCCTCTTCTGCGACGCCATGGTGTGGGCCGTCACCTTCCTCACCTTCCCCGTG
CGCCTCCTCGCCGCCGCCGACAGGGAGCGCAAGTTGGACCGGCTGGTGGTGGAAATGCAG
GGGCAGATGGAGCGGGTGGTCTGGGAGAACAGGGACCTGGAGCAGAGGTTGAGGGTGGCG
CTCAAGGAGAAGGCGACCATGGAGGACATCCTCGACGAGATGGAGGAGGAGAACGAGGAT
GCCTTCGCCCGGATCGACCTCCTCGAGAGCCAGCTCAAGGCGCTCAAG

Homology of Contig U35_22120 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None