barSeed - Barley Seed Development Database

Probe CUST_19537_PI390587928

Source Contig U35_22123

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19537_PI390587928	Hv_44K_v2	GGGGTGAAACTGTTGTGCTATGATTGTTATAAAGAAAAGTCGCCGTATGTTCTGCATCAA	899	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13125.1	2819	6e-24	4 - 62	100	59 / 59	minus	ABC15654
JLOC1	JLOC1_8853.1	2766	3e-24	5 - 63	100	59 / 59	minus
Harvest21	ABC15654	974	3e-25	16 - 75	100	60 / 60	minus	ABC15654
Harvest35	U35_22123	974	3e-25	900 - 959	100	60 / 60	plus

Contig Sequence (974 bp)

>U35_22123 974 Hv_44K_v2
TCGGCAAAAACTTGCCAACGATGTCCAGAAGATAATTGGAAATGGGTCAGGCAATAAGCT
ATGTGATGATTCCACGCCACTGCAAGTGGACAGAGTGATTGCGTTGAGCTTCGAATTCAT
AACCTACATGTTTGGGCACTGGCTGAAATACGCCGAGTACTTGCTAAGGATGATTTTGGA
CACTGCCAACACGTTGGACTCGGACGGTGACCTGGTCCGCCAGATATTTGATAAAGAAAT
CGATAACCACCATGAGGAGAAGCTGCTGATATGCCAACTCAGCTGCTCAAACATTCAGAA
GCTCGTGCGGTCTGGGGCAACATCAGGGAGAAGTGAAGTGCTGTTGCAGAACTGGAGGGA
GCGTTTCTTGCACCAGCTAACGTCGTTGACGAGCGGCTATCTTGAAAAAGAGGGGAAAAC
CGATTGGATTGGCGGCATCGGCAACCACAAGGATGTGTTCTCGTCAGTATACGCAAATCT
GCTTGGCCTGTACGCGCTGACTGAATCAAGGTGGTTATCAGAACTAGAGGAACTGGAGGA
CAGGCACAAATCGTATCTGCAAGAATTCTCAGAGCTGGAGGGGTTCATCGCCCCGTTCCT
CAAGAACCCTTTGCTCTCCAACCTCTATTTGCTGGTGAAGCGGTCGCACAAGCCGGAGGA
GGACCATTCGGGAGGCTTCGCCGCCTTGGAAAGTTTTGATCCCTATTTTCTCCTCAGATG
ATTTTTTTTTCTTTCTCATGTACAACAATTAAGTAGCTCCTTTTGGGGCGAGATAGCGGT
CACTTTGTTCTTTAGAACCAATTTGCAAATTGCTTTTGGGTACATGTGATGAGAAGTATT
TGTGAGCTGTGTTTCTTTCTACAGCTAAGTTTTGCAGCCACCACAATTCTGTTTTGTTGG
GGGTGAAACTGTTGTGCTATGATTGTTATAAAGAAAAGTCGCCGTATGTTCTGCATCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_22123 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g07290.2	1587	2e-92	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi3g15920.1	2168	5e-100
Arabidopsis v10	None