barSeed - Barley Seed Development Database

Probe CUST_19536_PI390587928

Source Contig U35_22124

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19536_PI390587928	Hv_44K_v2	AAGCTGGAGTGCCTCTACCATGGCTGGCAGTTCGACGGGCAGGGCAAGTGCGTCAAGATC	511	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358490	3130	2e-24	477 - 536	100	60 / 60	plus	ABC13844 ABC17852 ABC41122 ABC44969
MLOC	MLOC_45903.2	581	2e-24	327 - 386	100	60 / 60	plus	None
MLOC	MLOC_45903.1	443	2e-24	187 - 246	100	60 / 60	plus	None
JLOC1	JLOC1_29757.1	442	8e-25	186 - 245	100	60 / 60	plus
Harvest21	ABC18376	655	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_22124	656	3e-25	512 - 571	100	60 / 60	plus

Contig Sequence (656 bp)

>U35_22124 656 Hv_44K_v2
CAGCTACAGGCTTCCTATCCGGGCCATCGACCGCGCGAGCTCTGTGCGCCAACCAAACCA
GACGAGACCAGACATGACGCCTCCTCCTCCACCCGCCACCGCGCTGCCGCGCCCGTCCCT
CCTCCTCGCGGTCTCCTCCGCCGCGCTCCAGATCTCGTCGGCAGCGACGAGCCCGGCGCG
CGGCGTGCGGTGGCAGGGGGTCGGGGGGAGGAGTGAGAGGAGCCGGGCCGTCGGGTGGTG
CCGGGCGGCGGCGGTGGAGGAGGCCGGCGCGCAGGAGGACGGCGTGCTGCTCCCCAAGGA
CGGGAGCGAGGCGGCCGGGAGGTACGACTGGCGGGAGGAGTGGTACCCGCTCTACCTCTC
CAAGGAGGTGCCCGACGACGCGGCGCTCCCGCTCACCGTCTTCGACCGCCAGCTCGTGCT
CTACCGCGACGCCGACGGCGTGCTCCGCTGCCACGAGGACCGATGCCCGCACAGGTTGGC
CAAGCTGTCAGAAGGGCAGCTCGTCGACGGCAAGCTGGAGTGCCTCTACCATGGCTGGCA
GTTCGACGGGCAGGGCAAGTGCGTCAAGATCCCACAGCTGCCTGAGGGCGCCAAGATCCC
GCGGAACGCGTGCGCGCGCAACTACGAGGTGCGGGACTCGCAGGGGGTGGTGTGGG

Homology of Contig U35_22124 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54980.1	540	3e-83	protein\|pheophorbide a oxygenase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g53860.1	540	2e-84
Arabidopsis v10	AT2G24820.1	539	3e-61	\| Symbols: TIC55-II \| translocon at the inner envelope membrane of chloroplasts 55-II \| chr2:10575038-10576829 FORWARD LENGTH=539