barSeed - Barley Seed Development Database

Probe CUST_19526_PI390587928

Source Contig U35_10152

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19526_PI390587928	Hv_44K_v2	CCAGATGTACTATGTAACCTTGGCTATCTATCTATACAAAATTTGCATGCTTTGCACTAA	600	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.684	1.481	1.105	0.909	0.231	0.373
Raw	100.681	140.537	91.943	124.910	10.593	18.359

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_2466.2	967	1e-23	873 - 930	100	58 / 58	plus
JLOC1	JLOC1_2466.1	1006	1e-23	912 - 969	100	58 / 58	plus
Harvest21	ABC19776	675	3e-25	16 - 75	100	60 / 60	minus	ABC19776
Harvest35	U35_10152	675	3e-25	601 - 660	100	60 / 60	plus

Contig Sequence (675 bp)

>U35_10152 675 Hv_44K_v2
CTCCACCAGAAGATGGTGAACTGTGGGAGTACTTCCCTTGCCCTTTCTGCTACATCGAGG
TTGAAATGCCCTTCATCTGCAGCCATCTGCAGGAGGAACACTGCTTTGACACCAGAAATG
CTGTTTGCCCGATATGCGCCGAGAATCTAGGGAAGGACATGTCCGCGCATTTCAGATTCC
AACACTCGCATCTTCTTAAGAGGAGGAAGCCTTCGAGGCCGAGCAGCTCACCATGGCCAG
CAGCAGCAGCACCATCCCCATATGAAGTGAACCCCTACCCCTACATGATGAGCAGCAGGC
CATGCCAGGACCCTGAGCCTGACCCACTGCTCTCCCAGTTCATCTGCCGCGGCAGCACCG
ACAAAACCGAAACCGAGCTGGGATCACGCGACGGAGCAAGCCAGCACCATCGCCCGAGCA
GCGCTCATCTGTTAGCGGATACCCAGAGGCCTGTGAGCCGGCTGGAGCTGGAGGAGAGGC
TGCAGAGGATTGAGTTCCTTGCTGAGATCATCACATCAACCATTCTTTAGTTAAATTATA
ATCTCTAATTGTGTTGATGTCTAGGGTTTCTTGACCAGTTTTAAGCCTGTGTTTTATGAT
CCAGATGTACTATGTAACCTTGGCTATCTATCTATACAAAATTTGCATGCTTTGCACTAA
AAAAAAAAAAAAAAA

Homology of Contig U35_10152 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73960.1	203	2e-58	protein\|drought induced 19 protein, putative, expressed
Brachypodium v1_2	Bradi2g61990.1	225	5e-68
Arabidopsis v10	None