barSeed - Barley Seed Development Database

Probe CUST_19523_PI390587928

Source Contig U35_10155

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19523_PI390587928	Hv_44K_v2	TTTCAGCATACAGTTGCAGCAGTGAAAGTTCTGAACTCCCTGGAAGGTTTTGGAACTCAG	436	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358660	2931	2e-24	1586 - 1645	100	60 / 60	plus	ABC20215
MLOC	MLOC_12526.3	1884	2e-24	818 - 877	100	60 / 60	plus	ABC20215
MLOC	MLOC_12526.2	1907	2e-24	1604 - 1663	100	60 / 60	plus	None
MLOC	MLOC_12526.1	2903	2e-24	1632 - 1691	100	60 / 60	plus	ABC20215
JLOC1	JLOC1_8406.2	2889	8e-25	1525 - 1584	100	60 / 60	plus
JLOC1	JLOC1_8406.1	3089	8e-25	1725 - 1784	100	60 / 60	plus
Harvest21	ABC20660	660	3e-25	437 - 496	100	60 / 60	plus
Harvest35	U35_10155	660	3e-25	437 - 496	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_10155 660 Hv_44K_v2
CCCCGGGCTGCAGTTGAAGGTCAAACTGCGACATCTTCAGAAGCTTCACGAGTGTGCTCA
TACCGAACCGGTTGACTCCACCCAGAAATTACACAACAACTTGGGCATCCAGCGTGTCGC
GGACGAAGTCAAACTTCGAGAGATTGACCTGACAGAAGAAATGGTGAGGAGATTGCTAAG
GCGAATGGAGAGAGAAGAAGAGGAGGCGGCCGAAAGAGAAGCTCAACCTATACAAAGCTC
TTCTGAACATAAAGCAACAGAGGGTGATGGTGATCACCAAACTGCTGGAGAGATCAACAC
AGGACTGAAAAGTGCCGGACGATGTTTAACCAAGTATAATAGGTACTCATGGGAGCATAT
CCAAGCGGCGACTTCGTCGTTTTCGAGTGATCTTGTGATTGGTAAGGGGACATATGGAAC
AGTCTACAAAGCTAAGTTTCAGCATACAGTTGCAGCAGTGAAAGTTCTGAACTCCCTGGA
AGGTTTTGGAACTCAGCAGTTACAGCAGGAGCTGGAGGTCCTGGGCAAGATCCGGCACCC
TCACCTGTTGCTGCTGCTGGGCGCGTGCCCGGAGCGCGGCTGCGTGGTGTACGAGTACAT
GGAGAATGGCAGCCTAGACGACGCACTCCACCGCGGCAACGGCACGCCGCCGCTCGCCTG

Homology of Contig U35_10155 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04880.1	807	3e-73	protein\|serine threonine kinase, putative, expressed
Brachypodium v1_2	Bradi1g51250.1	837	4e-85
Arabidopsis v10	None