barSeed - Barley Seed Development Database

Probe CUST_19521_PI390587928

Source Contig U35_10157

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19521_PI390587928	Hv_44K_v2	GTTGCATGCGGAACAAACCATACAGTCGCAATTGATTCGAGTGGCTATGTTTACACATGG	776	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.427	1.083	1.380	0.873	0.394	0.396
Raw	637.512	715.963	844.002	829.736	134.149	146.936

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248780.1	2008	7e-23	836 - 895	98	59 / 60	plus	ABC18553 ABC43933
MLOC	MLOC_9867.2	926	7e-23	195 - 254	98	59 / 60	plus	ABC18553 ABC43933
MLOC	MLOC_9867.1	1766	7e-23	196 - 255	98	59 / 60	plus	ABC18553 ABC43933
JLOC1	JLOC1_6409.1	1483	4e-23	196 - 255	98	59 / 60	plus
Harvest21	ABC19090	842	3e-25	777 - 836	100	60 / 60	plus
Harvest35	U35_10157	842	3e-25	777 - 836	100	60 / 60	plus

Contig Sequence (842 bp)

>U35_10157 842 Hv_44K_v2
CTGCTCCCCGCCGGATCTAGGGTTTCCGGCCTCCGAAATCGCGCCCCCGCCCCCCGCCGC
CGGCGAGAATGTCGGCCAGCGCCGGGACCGAGAAGGCCGCGTCCCCCGCAGCGGAGGCGC
CCAAGTCCGGCGGGGAGCTGCTCTACTGCGGCGCCACCAACTTCGACGCCATCAACCGGA
AGCTGCCCAGCGGGATGCAGGGCAACCTCGTCTCCCCGACGCGCCTGCGCTCGCTCATGG
GCGTCGACATCGTCTCCGTCGCCTCCGGATGCGCCGCTTGCCATTGTGTTGCTTTGGGTG
CCGATGGACGTTGCTATACATGGGGTCGCAATGAGAAGGGGCAGTTGGGACATGGTGATA
CTCTTCAACGTAACCTACCGACTGTTGTTTCTGAACTATCAAAATATAAAATAATTAAAG
CAAGTGTTGGAAAAAATCATACAGTAGTTGTAACTGACGACGGGAAGTCCTTTGCATTTG
GCCACAACAAATTTGGACAGTTGGGGACAGGTTCCCTAAAGAATGAAATTGAGGCATCGC
CAGTGCCCTGTCTTGTGACAGAAGTGACTGGTGTTGCTTGTGGTGGTGATTTTACTGTCT
GGCTGTCATCAGTCGAGGGCTCTACTATACTTACAGCAGGCCTTCCTCAGTATGGCCAAC
TTGGTCATGGAACAGACAATGAGTACAATACCAAAGATTCGTCAGTAAAGCTATCATATG
AACCTCAGCCCCGTCCCAGGGCAATAGCCGCGTTATCTGAGAAAACTATTGTCAAAGTTG
CATGCGGAACAAACCATACAGTCGCAATTGATTCGAGTGGCTATGTTTACACATGGGGGT
TT

Homology of Contig U35_10157 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56720.1	550	1e-147	protein\|RCC2, putative, expressed
Brachypodium v1_2	Bradi5g25080.1	548	1e-143
Arabidopsis v10	AT1G19880.1	538	1e-119	Regulator of chromosome condensation (RCC1) family protein \| chr1:6900648-6903818 REVERSE LENGTH=538