barSeed - Barley Seed Development Database

Probe CUST_19519_PI390587928

Source Contig U35_10159

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19519_PI390587928	Hv_44K_v2	AATGCCAATTTGTGCTCCAAAATCGTCGCGACGATTGCTGTGGGCAGCTCTCCTCGTCGC	5	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365733	4220	2e-24	3036 - 3095	100	60 / 60	plus	ABC07620 ABC12169 ABC14799 ABC15296
MLOC	MLOC_80384.3	664	2e-24	72 - 131	100	60 / 60	plus	ABC14799
MLOC	MLOC_80384.1	1028	2e-24	126 - 185	100	60 / 60	plus	ABC14799
MLOC	MLOC_80384.2	733	2e-24	126 - 185	100	60 / 60	plus	ABC14799
MLOC	MLOC_80384.4	1667	2e-24	72 - 131	100	60 / 60	plus	ABC14799
JLOC1	JLOC1_53519.1	1669	8e-25	103 - 162	100	60 / 60	plus
Harvest35	U35_10159	606	3e-25	6 - 65	100	60 / 60	plus

Contig Sequence (606 bp)

>U35_10159 606 Hv_44K_v2
AAGAAAATGCCAATTTGTGCTCCAAAATCGTCGCGACGATTGCTGTGGGCAGCTCTCCTC
GTCGCCCCGCTCGTCGCTGCGCTCTACCAATTCCCGATCCAAATCCTAAATCCCCGCGCC
CCAGAGCCGAAGGCCGCCCCCGCCACCGCCGCCATGGACGCCGGCCCCGAGCTGGAGCTG
GAGCTGGAGCTGGAGTACGATATGCCGGGCGTCCTGCGCGTGCACAAGAGCGGCCGCGTC
GAGCGCTTCGACGGCGTCGAGACCGTCCCGCCCTCCCCCTCCGGGGACCCCTCCAACGGC
GTCGCCTCCAAGGACGTGGTCCTTGACCCCGCGGCCAGCATCTCCGCCCGCCTCTACCTC
CCCGCCGCCGCCGCCGCGGAGCCCGGCAAGAAGTTCCCCGTCGTCATCTTCTTCCACGGC
GGCGCGTTCTTCGTCCACACCGCCGCGTCCCCGCTCTACCACAGGTACTGCGCCTCCCTC
GCCGCCGCGGTCCCCGCAGTCGTCGTCTCGGTCGACTACCGTCTCGCCCCGGAGCACCCC
ATCCCGGCCGCCTACGAGGACGCCTTCGCGGCCCTCAGGCGGTCGTCGGCGCGTGCCGTC
CGGGCG

Homology of Contig U35_10159 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28730.1	369	6e-54	protein\|gibberellin receptor GID1L2, putative, expressed
Brachypodium v1_2	Bradi4g32330.1	323	3e-59
Arabidopsis v10	None