barSeed - Barley Seed Development Database

Probe CUST_19513_PI390587928

Source Contig U35_22135

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19513_PI390587928	Hv_44K_v2	AAGAGGATGCGACATGTAACACTGTTTTTTCAGTTATATGAGAATATACACCGGGCTAAA	485	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64932.1	1755	2e-23	1635 - 1692	100	58 / 58	plus	ABC19726
MLOC	MLOC_64932.2	1741	2e-23	1621 - 1678	100	58 / 58	plus	ABC19726
MLOC	MLOC_64932.3	1709	2e-23	1637 - 1694	100	58 / 58	plus	ABC19726
MLOC	MLOC_64932.4	1802	2e-23	1730 - 1787	100	58 / 58	plus	ABC19726
JLOC1	JLOC1_42677.4	1640	1e-23	1536 - 1593	100	58 / 58	plus
JLOC1	JLOC1_42677.3	1547	1e-23	1443 - 1500	100	58 / 58	plus
JLOC1	JLOC1_42677.2	1568	1e-23	1464 - 1521	100	58 / 58	plus
JLOC1	JLOC1_42677.1	1519	1e-23	1415 - 1472	100	58 / 58	plus
Harvest21	ABC19726	559	3e-25	486 - 545	100	60 / 60	plus	ABC19726
Harvest35	U35_22135	559	3e-25	486 - 545	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_22135 559 Hv_44K_v2
GCTCAATTTTACTACGGCAGCTCTCCTGGATGAAACAGAAGCTCTTAAATCTGCAGACAC
GAAGGGTGAAATTCATTACCTTCGTGATTCTGATGATGAGCGACCTGACTCGGATGAAGA
CCCCGATGATGATTTGGATATTTAGCCACAATGTGAGCTCTGTTTATCCTAGTGGTCAGC
TATCAAGTCAAAGGAACATCAGGCGCTTGCGAAAATTCTAGGAGGCGTTCACTTTGCGTG
GGCGGCTGGAGCTACTGCATAGTTATGGTTGAACAATTTAAGCACCTGTATTATGTATAG
CTTCGTGAGCATTGGAAGGCAACCTTTGCAAATCACTGGGTTTGAAATTTCTTGAATGCT
CAAGACTAATGTGTTGATGGTAGCATATCGAATGAAAGGTCATATGCCCCAATGCGATTT
TGTAGTTTTGTTTCGACGTGGATGAATGTTGGCTAGTGTGTCAGTCGCTGAAATGGGTCC
AGAACAAGAGGATGCGACATGTAACACTGTTTTTTCAGTTATATGAGAATATACACCGGG
CTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None