- Probe CUST_1950_PI390587928
- Source Contig U35_46791
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1950_PI390587928 | Hv_44K_v2 | TGTTTTACCAATGTGAATTAAATCTTGAGCCGTCATCCGAAGTTTGGGGCAGGTAAAAAA | 11 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.465 | 1.723 | 1.219 | 0.820 | 0.351 | 0.369 |
| Raw | 1275.689 | 2368.882 | 1452.427 | 1517.556 | 229.791 | 264.937 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC47341 | 278 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC47341 |
| Harvest35 | U35_46791 | 278 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (278 bp)
>U35_46791 278 Hv_44K_v2 TTTTTTTTTTTTTTTTTACCTGCCCCAAACTTCGGATGACGGCTCAAGATTTAATTCACA TTGGTAAAACATCCCCCACAGGCCCATACACTAACCCTCACCATTCATCAAAAAAGAAAA AAAGAGGTCCCGCTTCCTCAACTAACTACATTATTTTGATCCCCGGCTGACGGACTGACG CGACCGACTCCAATTAACCCCCCCCTGTATTCCTCCCCTTTAGCAAACCGCAACCTATGT GCTACCCGTTTCAGGTACACGCATGGCAATCGGACGGT
Homology of Contig U35_46791 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |