barSeed - Barley Seed Development Database

Probe CUST_19509_PI390587928

Source Contig U35_22139

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19509_PI390587928	Hv_44K_v2	TCGTTGGCGTACAATTTGTCATACATTCTTAACCGAAGTAGTTGTTGATGAGACAAAAAA	404	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58292.1	2721	9e-22	395 - 449	100	55 / 55	minus	None
JLOC1	JLOC1_37858.1	2486	5e-22	2168 - 2222	100	55 / 55	plus
Harvest35	U35_22139	478	3e-25	405 - 464	100	60 / 60	plus

Contig Sequence (478 bp)

>U35_22139 478 Hv_44K_v2
GGTTCAGACGACCGGTGGATCCTGGGAGTCGAGCTTAACCAGGCGACGACGGACGAGGTG
TAACAAGAGATCCAAGAAAAGGGTGCTGGACGCCGTAGAAGAGGAGGCCCAGATCAGCGT
AGAAGAAGAGGTCCAGGTCAGCCCGCCAGCTAAACCCGACGACGAGGGCGTAGAAGCTGA
CAGCAACATAGGCATGATTGGGTGGGGGAGAACGACGAGGCGGTGTCGCAGGACGAGATG
CCCGTCGGCTATCACCGTCGCCGCTGCATCATGAAGAAACATTGGTGGCGCAATTGCGCT
ATTGGGCAAGCATCCTGAAACGTGTTATAGTTGAACTGGATGTAAAAGTGTACATACTTG
GGTGGTCAATTTGGATGGCCGGCAATGCTCTTTTGGGTAGAAACTCGTTGGCGTACAATT
TGTCATACATTCTTAACCGAAGTAGTTGTTGATGAGACAAAAAAAAGAAAAAAAAAAA

Homology of Contig U35_22139 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None