barSeed - Barley Seed Development Database

Probe CUST_19508_PI390587928

Source Contig U35_34110

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19508_PI390587928	Hv_44K_v2	CAAGCAAGATTGTACAAAAATGCCAATAGCACATTGTGTTCATGTGTGAGCTCTCTCTGC	284	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55338.1	5847	7e-23	4619 - 4678	98	59 / 60	minus	ABC05724 ABC14452
MLOC	MLOC_55337.2	6168	7e-23	4924 - 4983	98	59 / 60	minus	ABC05724 ABC14452
JLOC1	JLOC1_35679.5	5418	4e-23	1160 - 1219	98	59 / 60	plus
JLOC1	JLOC1_35679.4	5964	4e-23	1160 - 1219	98	59 / 60	plus
Harvest21	ABC14452	989	1e-23	871 - 930	98	59 / 60	plus	ABC14452
Harvest35	U35_34110	344	3e-25	285 - 344	100	60 / 60	plus
Harvest35	U35_6984	989	1e-23	871 - 930	98	59 / 60	plus

Contig Sequence (344 bp)

>U35_34110 344 Hv_44K_v2
GGCGAATTGGGCCTCTAGAAGGTGCTCGAGCGGCCGCTCCTTCATGTCTCTGAAGCATCA
CAGACTGCACCACTGCTTGACGCGTTGCAAGGCTGCCATGCTTACATGTTCTCTAGGCTG
TTTTGCTCCTAACAGCGAGGTTGCTGAATGCAATTTGCTGTAGTTCTGCTCACAGTTGTA
ACTCAGAGAAGTACAGGACCACTGGCTTTCCTAAACAACAATGGCATCAGAAGATTTCAA
ACATCCTGAGGATAGACGCCCAGTATGATTCTTTATTTTACTTGCAAGCAAGATTGTACA
AAAATGCCAATAGCACATTGTGTTCATGTGTGAGCTCTCTCTGC

Homology of Contig U35_34110 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None