barSeed - Barley Seed Development Database

Probe CUST_19502_PI390587928

Source Contig U35_10163

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19502_PI390587928	Hv_44K_v2	TCTGTTGTGCAGATTGTGGTGGAACCTTTTTATAGATGAATTGTGCTGGAGCCTGGTAAA	644	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.645	1.520	1.203	0.998	0.496	0.508
Raw	442.243	644.140	446.196	567.011	102.395	112.707

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10903.2	2263	3e-24	2055 - 2113	100	59 / 59	plus
JLOC1	JLOC1_10903.1	2429	3e-24	2221 - 2279	100	59 / 59	plus
Harvest21	ABC21181	718	3e-25	15 - 74	100	60 / 60	minus	ABC21181
Harvest35	U35_10163	718	3e-25	645 - 704	100	60 / 60	plus

Contig Sequence (718 bp)

>U35_10163 718 Hv_44K_v2
GCACGAGGGTTACATTCCCTGATACCATGGGCCTTCCTAGCATATTTAGCTCCAAACCTA
TCAGCTATCCACCTCCAAGGGAGAAGTGCGCGGGCCCCTCGTGCCCAAACCCTTACAAGT
ACCGTGACTCCAAGACGAAGCTTCCCCTATGCAGCCTGGAGTGCTACAAGGCCGTCCAGG
GAGGCGCCGGGACGATGGCGTGCTGATGCTACAGAGTTGATGGCAGACATGGAGGAGCTG
GAGAACTGCATCTCACCCAATGCCCTGCCTGTTTGTCGTTTTTGTGATGCCTTTGCTAGT
CCAAGGATTGAAAACCGATGGACGACAGATGATGTTGAGGCTCCTGCTGCTGGTTTTCCT
TTTTTGGCTCTCGTGGATGTATGTAGTTGCTGGGCCGTGCAAAAGAGTATGGTTTATGTG
TTAGTATGTGGCAAGTGGAGGATCAGCCTTGAATTATGTACAGTGTTGGTCGGGCTTGAC
GCTAAGGCTTAAGCCAGGATGGGATGAGTTGAGTTGTCGGGCTTGACGCTAAAGCATATG
CGATGAGTTGAGTTCGGTTGTCGTCGAGCACTATTTTCTTGTTGTAGCCAGTCTTGGAAC
CCGTTTCTGTAGACTATGCAGTAATGGAAGATAGACCTGCATCCTCTGTTGTGCAGATTG
TGGTGGAACCTTTTTATAGATGAATTGTGCTGGAGCCTGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_10163 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None