barSeed - Barley Seed Development Database

Probe CUST_19500_PI390587928

Source Contig U35_10165

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19500_PI390587928	Hv_44K_v2	TTGAGTCTAGGTTGGTAAGTTTGGAAAATTGCTGTCAGTCATGTTTAGAGAACAAAAACT	538	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.147	1.183	1.109	1.067	0.526	0.495
Raw	618.894	996.844	817.503	1192.862	217.857	219.425

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_15131.1	1767	4e-23	1681 - 1737	100	57 / 57	plus
Harvest35	U35_10165	627	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_10165 627 Hv_44K_v2
GGCAATCTATGTCGGAATCCTCTTGTGGAGGATGACACGGTTCATCTGGTCTGCTAGAGA
TGCCAGCCGAGCTAGAAGGCTTGCTAAGCTTGAAGAGGTTCAGAGCAGGCTAATTCATGC
AGCAAAGGACGCAGACATCAATGAGATCCGGGATCTGCTGAAGGAGGTCGAGCTAGCAGG
CCATGACAAGCCTGGCTTTTCACAGAGAGCCATCCTGGCCTTTGCTGCAGCTACAATTAT
TTTCACGCTGACCTGTGTTGTCCTTGCCCTTACTTTAACCAGCGACGGGTGATTTCAGTT
GCTAGAATCCCCTTGAGTTTACCCATTCTCTTGGGTTACACTGTTGTTCTCTGTAGGTTG
AGACTGTCGAGCGTCATTTCTTGCAGGGAACATGTTTGAGCAAAATTGTAAGTTCAGTTT
AGTGGTGATAAGTTTGCAAAATTGCTGTCAGTCGTTTTGAGCTTGTGCCGTTGTGAACTG
TAATAGCCCTGACCGTGCTGTGTTCTTTCCTCTGCACCAACTGAAGATATTGCATATATT
GAGTCTAGGTTGGTAAGTTTGGAAAATTGCTGTCAGTCATGTTTAGAGAACAAAAACTAA
TGATTTGAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_10165 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None