barSeed - Barley Seed Development Database

Probe CUST_1949_PI390587928

Source Contig U35_46792

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1949_PI390587928	Hv_44K_v2	GCCCAACTACAGCCACGACATGTGCATCAACTTCTACCGTCAATGGATTGGGTACAGCAC	445	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3847.3	1009	2e-24	496 - 555	100	60 / 60	plus	ABC06657 ABC10403 ABC10404 ABC21749
MLOC	MLOC_3847.1	1104	2e-24	591 - 650	100	60 / 60	plus	ABC10403 ABC10404 ABC21749
JLOC1	JLOC1_2314.1	900	8e-25	534 - 593	100	60 / 60	plus
Harvest21	ABC47347	505	3e-25	446 - 505	100	60 / 60	plus
Harvest35	U35_46792	505	3e-25	446 - 505	100	60 / 60	plus

Contig Sequence (505 bp)

>U35_46792 505 Hv_44K_v2
CCCCTGCCGCCGGGATGACCGAGGACGTGCAAATGGGCGAGCCTGGGGCAGCCCCTCCCC
CCGCCGCCGCCGCGGCGGCACCGGCCCCCTCCACCCTCGAATATCTGAAGGAGATCGCCG
CGGTGATCGAGGCGGGGTGGCTCTCGAAGGAGGTACGTCGGATCTCCCGCGCCGTCCGCC
TCACCGGTTTGGACGACACCACCACCATGTCCACCCACGAAAGGAAGGCCAGGATCAGCG
AATTCTATGCCGTGATATTCCCCTCCCTCATGCAACTGGAGCACGGGATCAGCGACTCCG
ACGACCGGAGGCAGAGGGCGGTGTGCTCCGAGAGGTACATGAGGAGAGACGAGCCGGAGG
ACAGCAAGAGGCCGGTCTCCGAGATCGATGCCGAGATAGAAGAAGAGTGCGGGATGTGCA
TGGAGCTCAACAGCAGGGTCGTGCTGCCCAACTACAGCCACGACATGTGCATCAACTTCT
ACCGTCAATGGATTGGGTACAGCAC

Homology of Contig U35_46792 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None