barSeed - Barley Seed Development Database

Probe CUST_19499_PI390587928

Source Contig U35_10166

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19499_PI390587928	Hv_44K_v2	GCCGATCGCGACCGACCGATCGACCAGGCGCCTATTCTTAGGATCGGAGCGCGCGTCGCC	182	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357718	2483	2e-24	217 - 276	100	60 / 60	plus	None
MLOC	AK360384	2491	2e-24	216 - 275	100	60 / 60	plus	None
MLOC	MLOC_49762.1	180	2e-24	52 - 111	100	60 / 60	minus	None
Harvest21	ABC19952	362	3e-25	183 - 242	100	60 / 60	plus
Harvest35	U35_10166	362	3e-25	183 - 242	100	60 / 60	plus

Contig Sequence (362 bp)

>U35_10166 362 Hv_44K_v2
GCGAACTCTAACCCACAGCCCAACTTTTAATTTCCCCTGCCCCCCGCACGAGCTCCAGCC
GAGCCGACCCGAGCCGCGAAACGCATCCCCCCACCCGGCGGCGACGTACGGGCGGAGGCG
CGCGGCGAGGGCAAAAACGAGGCAGCCAACCGTCGGCCCGCGCCCGATCGTTCCCCGGAC
GGGCCGATCGCGACCGACCGATCGACCAGGCGCCTATTCTTAGGATCGGAGCGCGCGTCG
CCGAACGAGGCCGGCCGGCCATGGCGGCGGCGGCGTCCTGCGGCGGCCCCGACCCGGCGT
CATCGTCGTCCGTGGCGCACCGGCGCCGCCTCGCCGACGTCGAGCGGCCGGACGGCCCGC
GC

Homology of Contig U35_10166 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None