barSeed - Barley Seed Development Database

Probe CUST_19496_PI390587928

Source Contig U35_22140

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19496_PI390587928	Hv_44K_v2	CCATCATTATGTAATGCAGATTCCAAGGCCTTGGGGCCCTTTCCGATAATTCTAAAACAC	1201	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362166	1589	7e-23	1514 - 1574	98	60 / 61	plus	ABC16426
Harvest21	ABC16426	1264	3e-25	1202 - 1261	100	60 / 60	plus	ABC16426
Harvest35	U35_22140	1264	3e-25	1202 - 1261	100	60 / 60	plus

Contig Sequence (1264 bp)

>U35_22140 1264 Hv_44K_v2
CTCCCTCGTCTGCGAGCGCTGGCGCTGCCTCGTCTCCGACCCCCGCTTCTGCCGCCGCTT
CCGCCGCCACCACCGCCGAAACCCTCCCCTCCTCGGCTTCTTCGACAGAGACAGCGACCT
CTTCCCCTTCCTACCTACTCTCGAGCCCCCCAATCGTGTCTCTCCTGGCCGCTTCTCCTT
GCAGCGCGGCGAAGGCGACCGATTCATGTCGCTTGGATGCCGCCATGGCCTCGTGCTCAT
CTACGTACGGCCGACCAAGGTTCTGGTGTGGGACCCCATCACTGGAAAACGGCACGATCT
TGCCATTTCCCCAGGGCTTATGACACACGCGGAGAAGACAACCATCAATGGGGCAGTGCT
GCCGGAGACATCCAACAGTTCCATGTGGTCTTGACATTGGTGGACAACGCCGACAAGCAG
CACAAACGAGCGCTCGCCTGCCTTTACTCTTCGGAGACCGACTTATGGGGTGATCTCGTC
TCAACACCGGTTCCTACCAAGGTGTCCACCTCGGACATTTTGAGTGATGAAGTTGATGCC
ACCTTGGTGACATCGGGAAAGCCCGCTGTGATGGTTAAGGATTCTCTTTACTGGATTCTT
GTTGGGAATTTTGTTGGAATTCTTGAGTTTGATTTGGAGAAGCAAAGCCTAGCTGTGATA
TGGCTGCCAGTGCATATTCTTGAAAATGGGTATTATTACCAGTTCTGGATTATGCGGGCA
GAGGGTGGTGGTCTTGGTTTACTATTGCAGAAAGATCAGAGCTTCCAGTTATGGAAGAGG
AAGACTGATTGTGATGATGTTGCTTCATGGGTTCTTGGAAGAACTATTGAACTGAACAAT
CTACTTTCCCTGAATGGAAATCGTATCCAATTCATACTAGGGTTCGCTGAGGAGAATAAT
GTGGTGTTTGTGTGGACACACGGCGTCGTCTTTATGGTCCATCTTCAGTCTTTGCAGTTC
AAGAAACTTGGTGAGACCAGAAGCCTTTCTTGCTATCATCCATTCGAAGGTGTCTACACT
GCAGGCCCGCGGGGTGCTGTTTATCGGAGCAATGAGGTCGTCCGTGTTGTCGAGCTTCAA
TGCAAGACTGGTGGTGCAGGATCTGATTGCTTTTCTCACTTTTTATGTTACAGGCCTTCT
AGTAAATTCTATGGGGATGTACTGTAATTTTTTTAACACCTCTATGTAACTTGTATCACC
ACCATCATTATGTAATGCAGATTCCAAGGCCTTGGGGCCCTTTCCGATAATTCTAAAACA
CGGG

Homology of Contig U35_22140 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g02247.1	392	9e-68
Arabidopsis v10	None