barSeed - Barley Seed Development Database

Probe CUST_19494_PI390587928

Source Contig U35_22142

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19494_PI390587928	Hv_44K_v2	TAACATGTAGTAGTGGTGCCGAATGCTGCAGACGAATGGAATGACTTGTTGAACAAAAAA	863	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.031	1.434	1.338	1.042	0.457	0.486
Raw	1588.743	3338.657	2835.070	3444.823	536.741	615.456

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC17541	934	1e-23	864 - 923	98	59 / 60	plus	ABC17541
Harvest35	U35_22142	934	3e-25	864 - 923	100	60 / 60	plus

Contig Sequence (934 bp)

>U35_22142 934 Hv_44K_v2
GGGCAGCGTTCATGCAGCATCTAATCCTGTACTTTTGGAATCGTTTTGAGGTGCCAGCCC
TCCAGAGATTCATCAGGAGCCGAGCTCACATTCACCAACAGACCGGCGTCCAGATCACAT
CCTCTACCATTTACACTTCGACACTACATATCGCGAGGGTAAACGTAAGAGACCCCGGCA
CGATAAATGACGACATTGGCGCAGCCCGTGAAGCAGATCCCCTGCTGGCCCAGGACGAGC
CCACGAGGAACCAACAAGAGGTGGGGCAGCAGCTCAACGAAAACGCCGAGGCAGCAGCCG
CCAGCCCTCTCCAGTACGAAGATCAAAACCTTGAGCAAGCCGGCAATGCCCCCGCAGCCT
CGGGCTCCTTGAACCCGTTCGGTTCCCTCTTGCTATGGTTGTTAGGAGGCGGCGCTTCTG
ACGGCATAGTTTCTTTCTTCTCCATGTTCAGGGACGTTCGCGACCACCAAGGTCAGGACT
ACGCCGACCCGCCCAGAAACGAGAACGAGCAGGTGACATAGAAACCGTGGAGACGGAAAA
TATGAAGGCGGACCATATAAAAGATGAAATGCCGAGCATGGCGGGCGGATTGGACAAAGC
GATGGTCCGGTGTCGTTATAAGCTGATGATGCTAGCCCGCCCGCCCCCCTTCATCAAAGG
ATAATGACGAATATGCTTGCGTAGCGGCTTGCGGGCCGGAAATGCTGCCGTGTTATCTCC
CATATGCCTCTCTCTCTCTCTTTTTGGTTGTTGGGTCTAGTGTATGTAAATTGCTAGTGC
CGTTGGAGCCTTGTACAAAAAAACGCCGTTGATAGTGAGTGTTGTGCGATTCTTTTTGTA
CTCCAGTGTGTGGGTGCGAGGTGTAACATGTAGTAGTGGTGCCGAATGCTGCAGACGAAT
GGAATGACTTGTTGAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_22142 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g45770.1	665	1e-71	protein\|expressed protein
Brachypodium v1_2	Bradi1g13150.1	666	6e-74
Arabidopsis v10	None