barSeed - Barley Seed Development Database

Probe CUST_19493_PI390587928

Source Contig U35_22143

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19493_PI390587928	Hv_44K_v2	TTGTGTGATTCTTAAGAGACGAAGTTGAGGGCAGAAGGCTCGTTCATCTTGGCTGTTCAT	453	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.597	1.478	1.205	0.895	0.439	0.566
Raw	1220.933	1767.740	1271.533	1497.770	252.127	357.989

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363582	2397	2e-24	2183 - 2242	100	60 / 60	plus	ABC16884
Harvest21	ABC16884	581	3e-25	110 - 169	100	60 / 60	minus	ABC16884
Harvest35	U35_22143	622	3e-25	454 - 513	100	60 / 60	plus

Contig Sequence (622 bp)

>U35_22143 622 Hv_44K_v2
CCGGATGCCTACGAGAGGCTGTTGCTCGACGCGATAGAAGGAGAGCGGAGGCTCTTCATC
CGGTCGGACGAGCTGGACGCCGCATGGGAGCTCTTCACGCCCCTTCTCAAGGAGCTGGAG
CAGAAGCGGATGGCCCCCGAGCTGTACCCCTACGGGAGCCGCGGGCCCGTGGGCGCCCAC
TACCTGGCAGCAAAGTACAACGTGAGATGGGGCGACCTGGGCGGCTCGGAACACTAGGAA
GAGATCGTGGTTTCACACGGGAGGCGATGACTTCTGTTTTTGGCGGCGATTGATTGATTC
CGCCGTCGCAATTTCTGCAAAGGGCCTGCACCTTACGCCCAGTTAGTGGGGAGTGATGCA
GGGAACAGGTCCGAATAAGGGTGAGCGGTCGACAATGCTTGTGTTGGTCGATCGACCGTG
GATATATATATGTTGGTACCACTGGCTTACATCTTGTGTGATTCTTAAGAGACGAAGTTG
AGGGCAGAAGGCTCGTTCATCTTGGCTGTTCATCGCCGTCATTTGGTTGTCTGGCCGGGC
TGGACTGGGCTGGGCTGTTGTAACGGTACTGCTGATTGTGTAACTGCAAAAGGCTGTTGG
TTGTTTAAAAAAAAAAAAAAAA

Homology of Contig U35_22143 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None