barSeed - Barley Seed Development Database

Probe CUST_19490_PI390587928

Source Contig U35_22146

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19490_PI390587928	Hv_44K_v2	TCTGTAGCTTCTTCCTAGTGTAAATTTCAAAGCTGGGGGTATCCAACTTCTCAGCTTCCA	1185	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370151	3178	3e-21	2870 - 2929	97	59 / 61	minus	ABC15964
MLOC	MLOC_70898.3	1899	3e-21	1592 - 1651	97	59 / 61	minus	ABC15964
MLOC	MLOC_70898.1	2996	3e-21	2179 - 2238	97	59 / 61	minus	ABC15964
MLOC	MLOC_70898.2	2674	3e-21	1857 - 1916	97	59 / 61	minus	ABC15964
JLOC1	JLOC1_47073.3	2161	2e-21	1626 - 1685	97	59 / 61	minus
JLOC1	JLOC1_47073.2	2153	2e-21	1618 - 1677	97	59 / 61	minus
JLOC1	JLOC1_47073.1	2492	2e-21	1957 - 2016	97	59 / 61	minus
Harvest35	U35_22146	1245	3e-25	1186 - 1245	100	60 / 60	plus

Contig Sequence (1245 bp)

>U35_22146 1245 Hv_44K_v2
TGGGGGTATTAGTGATGAGGGGGTTACTCAAATTGCCCAAGGTTGTCCAATGCTAGAGTC
TATCAACCTGTCGTACTGTACAGAAATAACAGATGTTTCGTTGATGTCGCTCTCAAAATG
TGCAAAGCTAAACACACTGGAGATCCGTGGTTGCCCCAGTATTTCATCTGCTGGGCTCTC
AGAAATAGCAATCGGATGCAGGCTACTTGCCAAGCTTGATGTCAAGAAGTGCTTTGCGAT
CAATGATGTGGGGATGTTTTTTCTTTCCCAGTTCTCTCATAGCCTCCGTCAGATAAACTT
GTCATACTGTTCGGTCACCGATATTGGGCTTCTGTCCCTCTCTAGCATATGCGGGCTTCA
GAACATGACGATTGTACACTTGGCGGGTATTACGCCTAATGGCTTGCTGGCTGCTCTGAT
GGTCTCTGGTGGTTTGACAAGGGTGAAGCTTCATGCAGCGTTCAGATCTATGATGCCCCC
GCATATGCTCAAAGTCGTTGAGGCTCGCGGCTGTGCTTTCCAGTGGATTGATAAACCATT
CAAGGTCGAGCAAGAACGATGCGACATATGGCAACAACAGTCTCGAGACGTGCTTGTACG
ATGAGAAATGTTTGACGTCGTCGTCTTGGCTGTCAGCCTACAGGATATGGTGTAGAACGA
GGCTTTGCACCAAGGTGGACTTGTGTACAGAACAGACATTATCGGAACAATGTTGTATAC
TCATGTTTCCTTCAGTGCACTAGGAGGTTCTTTTGTTGTGCCGTATCCTGTATATAGAGC
AGCAGGAGATGGATGAAATCATAGAGGAATTGCTGGAGGTCGACGTGTACTTAATAGAAA
CTCACCGATCAATGTGAGAGTGTGCACAGTTCTATTACCTGTCCAATGCGCTCTTGTTTC
GAATGAGTAGTAGTTTAGCCTGTGTTAGCGGCCGCTAGATGAATGAGCTGTATGTCGACA
TTATTAATTGTGGTTTACAAATGAATCTGCAGCCCAGCAACAACAGTATCAGCAAACTGC
TTCAGTTACAAAAAGGATAAAGGATAAAGAATTTCTGCTGCATCATATCGCTGTTCATAT
GATTGGTATTTAAGGCTGTGTTTGGTTCAGCTTTTTTTACCAACTTCTGCTTTGAAAAGC
TAAAAGCTAACCAAAGGGGTAAATGTTAAAAGCGGCTTTTGAGAATCTGTAGCTTCTTCC
TAGTGTAAATTTCAAAGCTGGGGGTATCCAACTTCTCAGCTTCCA

Homology of Contig U35_22146 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g01780.1	678	3e-102	protein\|F-box/LRR-repeat protein 3, putative, expressed
Brachypodium v1_2	Bradi4g44760.1	695	1e-117
Arabidopsis v10	AT5G01720.1	665	3e-55	RNI-like superfamily protein \| chr5:267118-270391 REVERSE LENGTH=665