- Probe CUST_19485_PI390587928
- Source Contig U35_34128
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19485_PI390587928 | Hv_44K_v2 | TCAGGAAGAGAAGTCTTGGGACAACATTCGTGAGGTAAAAGAACAGTACAATGCAGGAGG | 69 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.783 | 1.205 | 1.197 | 0.715 | 0.482 | 0.370 |
| Raw | 409.769 | 369.490 | 376.391 | 320.153 | 84.592 | 71.186 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK368865 | 2908 | 9e-22 | 588 - 642 | 100 | 55 / 55 | plus | ABC08240 ABC08241 |
| MLOC | MLOC_74063.3 | 3619 | 9e-22 | 229 - 283 | 100 | 55 / 55 | plus | None |
| MLOC | MLOC_74063.1 | 2459 | 9e-22 | 730 - 784 | 100 | 55 / 55 | plus | None |
| MLOC | MLOC_74063.2 | 2331 | 9e-22 | 688 - 742 | 100 | 55 / 55 | plus | None |
| JLOC1 | JLOC1_49343.1 | 2347 | 5e-22 | 704 - 758 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC16436 | 610 | 2e-22 | 318 - 372 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC16435 | 798 | 2e-22 | 495 - 549 | 100 | 55 / 55 | plus | |
| Harvest35 | U35_34128 | 223 | 3e-25 | 70 - 129 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_1526 | 926 | 2e-22 | 623 - 677 | 100 | 55 / 55 | plus |
Contig Sequence (223 bp)
>U35_34128 223 Hv_44K_v2 TGTGGCAGGCAGCAAGAGCAGTTTAACAGGCAAGATCAATCGAGCTCCCAGAAAGCTCAG GCTGGCCCCCCTCCTGCATTGTACTGTTCTTTTACCTCACGAATGTTGTCCCAAGACTTC TCTTCCTGAACTGCTGGTGCTGGAGGTTTCTCTGTGCGTGCACGCCAGTCACGGTTATCT GTCTCAGTAAACCGGTTTTGAGCTTGTACTTGTGTCTGTGTCT
Homology of Contig U35_34128 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |