barSeed - Barley Seed Development Database

Probe CUST_19479_PI390587928

Source Contig U35_46101

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19479_PI390587928	Hv_44K_v2	GCAATGTTGTAGTTGTAAAGCCCTCCGAGCTTGCTCCATCCACCGCCGCATTCCTTGCTG	476	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61036.6	1264	2e-24	497 - 556	100	60 / 60	plus	None
MLOC	MLOC_61036.1	1732	2e-24	499 - 558	100	60 / 60	plus	None
MLOC	MLOC_61036.5	1438	2e-24	864 - 923	100	60 / 60	minus	None
MLOC	MLOC_61036.3	1307	2e-24	1097 - 1156	100	60 / 60	minus	None
MLOC	MLOC_61036.2	1783	2e-24	1111 - 1170	100	60 / 60	minus	None
JLOC1	JLOC1_39849.2	1999	8e-25	583 - 642	100	60 / 60	plus
JLOC1	JLOC1_39849.1	1552	8e-25	136 - 195	100	60 / 60	plus
Harvest21	ABC45701	536	3e-25	477 - 536	100	60 / 60	plus
Harvest35	U35_46101	536	3e-25	477 - 536	100	60 / 60	plus

Contig Sequence (536 bp)

>U35_46101 536 Hv_44K_v2
CGGCCATCAACCGGCGAGCGTGCACTCCGTGAGCCATAGCTCCTCCGTCTCTCTTCCCAT
GGGAAGCCTGCATGAGAAGCCCGAGCATGGCTTCGGCGGCCTGCTGAGCGGCTTGCGAGA
GGCGTACCACAGCGGCAGGACCAAGGACCTCGCGTGGAGGCGGTCGCAGCTCAGGGGGCT
CCTCAGGCTGCTGACGGAGAAGGAGGAGGAGATCTTCGACGCGCTCCACGACGACCTCGG
CAAGCACCGCGCTGAATCTTACAGGGACGAGCTTGGGGCTCTCGTCAAGTCCGTCAACCA
CACGCTGAAAAACCTCGAGAGATGGGCGGCTCCCGAGAAGGCTCAAGCGCCGTTGGTTTC
TTTCCCGGCGACCGCGCTGGTGGTGCCAGAGCCTCTCGGCGTCGTGCTCGTATTCTCCTG
CTGGAATTTGCCACTAGGTTTGGCTTTGGAGCCACTCTCTGGCGCACTAGCAGCTGGCAA
TGTTGTAGTTGTAAAGCCCTCCGAGCTTGCTCCATCCACCGCCGCATTCCTTGCTG

Homology of Contig U35_46101 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43194.1	488	5e-57	protein\|aldehyde dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g50200.1	485	5e-64
Arabidopsis v10	None